RNA id: XM_026927304.2


Basic Information

Item Value
RNA id XM_026927304.2
length 4398
RNA type mRNA
GC content 0.50
exon number 27
gene id sf3b3
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13411360 ~ 13440802 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGCTAACACGCGCCTTGGAGAACCACAAGGACCCAAATCGTTAGAGCGGCGTTTGCAAAATACCAACCGGACAAGTTAATATTGTGAATGAGTTCTTCATCTGTCGATATCTTCACCATCCTGATAGTAAACTCGGTGAAGAGAACTTTATCCATCCAGAGCTGAAGGTCCAGAGACATTGATCATGTTTCTGTACAATCTGACCTTGCAGCGTGCTACAGGCATCACTCATGCCATCCATGGCAACTTCTCAGGTACCAAGCAGCAGGAGATTGTTGTTTCTCGAGGGAAGATTCTGGAGCTGCTGCGCCCCGATGCAAACACTGGCAAAGTTCACACACTTCTCACCATGGAGGTGTTTGGGATAGTCCGCTCTCTCATGGCCTTCAGGCTGACTGGTGGCACAAAAGACTACATCGTGGTGGGCAGTGATTCAGGTCGTATCGTTATCCTGGAGTATCACCCCTCCAAGAACATGTTTGAAAAGGTGCACCAGGAGACCTTTGGCAAGAGTGGCTGTCGACGCATTGTTCCAGGACAGTTCCTGGCTGTGGATCCCAAAGGCAGAGCTGTTATGATCGGTGCTATAGAGAAGCAGAAATTGGTGTACATCCTGAATAGAGATGCAGCCGCTCGCCTCACCATCTCCTCCCCTCTGGAAGCACACAAGGCCAACACGCTGGTCTACCATGTGGTTGGGGTGGATGTGGGTTTTGAAAACCCCATGTTTGCCTGTCTCGAGATGGACTACGAGGAGGCTGATAACGACCCCACAGGGGAAGCGGCAGCTAACACGCAGCAGACTCTGACCTTCTATGAGCTGGACCTGGGGCTCAACCACGTAGTGCGCAAGTACAGCGAGGCTCTGGAAGAACATGGCAACTTCCTCATCACAGTGCCAGGTGGCTCTGATGGTCCGAGTGGTGTGCTCATTTGCTCAGAGAATTACATAACTTACAAGAACTTTGGGGATCAGCCAGATATCCGCTGCCCAATCCCACGCAGAAGGAATGACCTGGATGATCCAGAGAGGGGCATGATCTTTGTCTGCTCAGCCACACACAAAACCAAGTCCATGTTCTTCTTCCTCGCCCAGACAGAGCAAGGAGACATCTTCAAGGTTACCCTGGAAACAGATGAGGAGATGGTCACAGAGATTAGGATGAAATATTTTGACACCATCCCGGTGGCCACTGCCATGTGTGTGCTGAAGACTGGCTTCCTATTTGTGGCATCCGAGTTTGGAAACCATTATCTGTATCAGATAGCCCACCTGggtgatgatgacgatgaaCCCGAGTTCTCTTCTGCCATGCCTCTGGAGGAAGGAGACACCTTTTTCTTCCAGCCACGACCACTTAAGAACCTGGTGCTTGTGGATGAACAGGAGAACCTTTCCCCTATCATGTCCTGCCAGattGCTGATTTGGCCAACGAAGACACACCTCAACTGTATGTGGCATGTGGTAGAGGACCAAGATCTACACTAAGGGTTCTTAGACATGgtctggagGTCTCAGAGATGGCTGTGTCTGAGCTTCCTGGTAACCCTAATGCTGTGTGGACTGTGAGGAGGCATGTAGAAGATGAGTTTGACGCCTACATCATTGTGTCCTTCGTTAACGCCACACTGGTACTGTCAATCGGAGAAACTGTGGAAGAAGTGACTGACTCTGGCTTCCTGGGTACTACCCCAACTTTGTCCTGTTCTCTGCTGGGGGATGATGCTCTGGTGCAGGTCTACCCAGATGGTATTCGCCATATCCGAGCAGATAAGCGTGTGAATGAGTGGAAGACTCCAGGGAAGAAGACAATTGTGCGCTGTGCTGTGAACCAGCGGCAGGTGGTCATTGCCCTGACTGGAGGAGAGCTGGTCTACTTTGAGATGGACCCGTCAGGTCAGCTGAATGAGTACACCGAGAGAAAGGAGATGTCTGCAGATGTGGTGTGCATGAGCCTTGCGAACGTTCCTCCGGGTGAACAGCGATCACGGTTCCTGGCTGTGGGCTTGGTGGATAACACAGTGCGCATTATCTCCCTTGACCCCTCGGATTGCCTACAGCCGCTGAGTATGCAGGCTCTGCCTGCGCAGCCAGAATCTCTGTGTATAGTGGAGATGGGAGGTGTGGAGAAACAAGATGAGCTGGGAGAGAAAGGTGCCATTGGCTTCCTCTATCTCAACATTGGCCTGCAGaACGGTGTGTTACTCCGCACTGTGCTGGACCCAGTGACTGGGGACCTGTCTGACACTCGAACACGCTACTTGGGCTCTCGACCAGTGAAGCTTTTCAGAGTGCGAATGCAGGGCCAGGAGGCTGTGTTGGCCATGTCCAGCAGATCATGGCTGAGCTACTCATACCAGTCACGTTTCCATCTGACGCCACTTTCCTATGAAACCCTGGAGTATGCCTCAGGGTTTGCTTCAGAGCAGTGTCCTGAAGGCATTGTGGCCATCTCCACCAACACACTGAGAATTCTGGCTCTGGAGAAGCTGGGTGCTGTGTTTAACCAGGTGGCCTTCCCGCTACAGTACACACCACGCAGATTTGTCATTCATCCAGAGACCAACAACTTAGTCCTCATTGAAACGGACCACAATGCCTACACTGAAGCCACCAAGGCCCAGCGCAAGCAGCAGATGGCAGAGgAAATGGTGGAGGCTGCAGGAGAGGATGAGAGGGAGCTGGCTGCAGAAATGGCTGCTGCCTTTTTGAATGAGAACCTTCCAGAAGCGATCTTTGGTGCCCCAAAGGCTGGCTCGGGACAGTGGGCCTCACTGGTGCGCCTGATCAACCCCATCCAGGGCAATACCCTTGATTTAGTTCAACTGGAGCAGAATGAAGCTGCCTTTAGcGTGGCTGTTTGTCGCTTTGCTAATGGCGGTGATGACTGGTATGTCTTGGTGGGTGTGTCAAGAGACATGATCCTTAACCCACGCTCAGTGGGCGGTGGCTACATTTATACCTACCGCCTGGTAGGAGGTGGTGAAAAGCTGGAGTTTGTACACAAGACCCCAGTGGAGGATGTGCCCCTGGCCATCGCCCCCTTCCAGGGCAGAGTATTGGTGGGGGTGGGCAAACTGCTGCGCATCTACGACCTTGGCAAAAAGAAGCTGCTCCGCAAGTGTGAGAACAAGCATGTTCCTAACCTGGTGACGGGCATCCACACTATCGGCCAGCGTGTGATTGTGTCAGATATCCAGGAAAGTCTGTTCTGGGTGCGCTACAAGCGCAATGAAAACCAGCTCATCATCTTTGCTGATGACACAAACCCACGCTGGTTAACCACCGCCTGCCTGCTCGACTATGACACCATGGCTGCAGCTGACAAGTTTGGGAATATTAGTATTGTTCGTCTACCACCAAACACCAGTGATGATGTGGATGAGGACCCCACAGGGAACAAAGCGTTGTGGGACAGAGGCCTGCTCAATGGAGCCTCCCAAAAGGCTGATGTAATTGTGAACTACCACATAGGAGAAACAGTCCTGTCACTGCAGAAGACCACGCTCATCCCTGGAGGCTCGGAGTCTCTGGTGTACACCACTCTGTCAGGTGGCATTGGCATCCTTGTGCCCTTCACATCTCATGAGGACCACGACTTCTTCCAGCACTTAGAAATGCACATGCGCTCAGAGTTCCCTCCACTTTGCGGCCGAGACCATCTTAGCTTCCGCTCGTATTACTTCCCTGTGAAGAATGTAATTGATGGAGATCTCTGTGAGCAGTTTAACTCCATGGATCCCCATAAGCAGAAAAGTGTTGCTGAAGAGTTGGACCGCACACCACCAGAAGTGTCTAAGAAACTGGAAGACATCCGCACACGTTATGCCTTTTAAAATCCTTGTTGTATTTGTTCTACAAATGAACATTTTCAAGCCCACTTTGTTTTCGGTGCAACCACAAGTTTTCTGCCATAAATATGAGTACTGTATTTTGGACGAGTACTTTAAAGATGTTTAGAGACAGAGCCCATTAGAGAGGTGTCCCTTGATCAGTGTAGTAAAATTGAAGCTTTCCATGCCAAGGACTTGGTTGTGGTTTAAAAAGTGTAAGAGCAAGGAGTTGAACATGTTGGACAATACTTTTTCTGCTACCACAGTGTTTGAAATTATGTCTGATTTTTACCGTGTGCATCATAAGATTTCAGATTTAGCAACATGTTTAGTTCATTTGAAGTTTGAAAATAGTACTGCTCTTACGTGTCACTGTTCCAAATGATGGCGGAATTTGTAAAATAGCTATAGCTGTCTTTACAGAGGAACTGTGGGGTGTTTGTggttgtaatgtttttttttgttgttttttttttccttgggcCGGTTGCTCAGATCAAACTCATACCCACACTTTTTTTCTAAAGCTGTACTAAAATAAATACTCTTTGTAAAATGTTT

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12830 SF3B3, SAP130, RSE1; splicing factor 3B subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117412 lncRNA downstream 93352 13311405 ~ 13318008 (-) False LOC117597528
XR_004578307.1 lncRNA downstream 99014 13311395 ~ 13312346 (-) True LOC117597528
TU117133 lncRNA downstream 228810 13182343 ~ 13182550 (-) True G98790
TU117117 lncRNA downstream 276187 13129200 ~ 13135173 (-) True G98776
TU117108 lncRNA downstream 382763 13027458 ~ 13028597 (-) True G98767
TU117519 lncRNA upstream 204773 13645575 ~ 13647786 (-) True G99118
TU117536 lncRNA upstream 292149 13732951 ~ 13768470 (-) True G99134
XR_003403491.2 lncRNA upstream 341973 13782775 ~ 13784737 (-) True LOC113534347
XR_003403492.2 lncRNA upstream 341973 13782775 ~ 13784674 (-) False LOC113534347
TU117539 lncRNA upstream 341990 13782792 ~ 13784697 (-) False LOC113534347
XM_026927072.2 mRNA downstream 6630 13398275 ~ 13404730 (-) False il34
XM_026927073.2 mRNA downstream 6630 13398275 ~ 13404730 (-) True il34
XM_034305370.1 mRNA downstream 15667 13374859 ~ 13395693 (-) True lonp2
XM_026927149.2 mRNA downstream 274143 12988345 ~ 13137217 (-) False znf423
XM_026927148.2 mRNA downstream 274143 12988345 ~ 13137217 (-) True znf423
XM_026927145.2 mRNA upstream 34729 13475531 ~ 13491284 (-) True aars1
XM_026927144.2 mRNA upstream 34729 13475531 ~ 13491178 (-) False aars1
XM_026927460.2 mRNA upstream 53801 13494603 ~ 13505452 (-) False tgm2l
XM_026927459.2 mRNA upstream 53801 13494603 ~ 13505452 (-) True tgm2l
XM_026927749.2 mRNA upstream 81349 13522151 ~ 13525974 (-) True arl2bp
TU117111 other downstream 359049 13045823 ~ 13052311 (-) True G98770
TU116638 other downstream 987382 12421102 ~ 12423978 (-) True akip1
XR_003403510.2 other downstream 1006079 12397687 ~ 12405281 (-) False znf143b
TU116624 other downstream 1096835 12312082 ~ 12314525 (-) False admb
XR_004578339.1 other downstream 1800396 11588001 ~ 11610964 (-) False arntl2
XR_003403499.2 other upstream 109878 13550680 ~ 13562574 (-) True c6h15orf39
trnaq-cug_10 other upstream 204607 13645409 ~ 13645480 (-) True trnaq-cug_10
XR_003403538.1 other upstream 324124 13764926 ~ 13765056 (-) True LOC113534845
XR_003403544.1 other upstream 342753 13783555 ~ 13783624 (-) True LOC113534852
XR_003403543.1 other upstream 345976 13786778 ~ 13786848 (-) True LOC113534851

Expression Profile