RNA id: XM_026927324.2


Basic Information

Item Value
RNA id XM_026927324.2
length 2300
RNA type mRNA
GC content 0.53
exon number 3
gene id nr2f2
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16074947 ~ 16083613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCAAAGTTCACTATATAGAGAGCTCGGTGAGCTGATCAGAGAGAAAGCATTCTGCCAGCCCAGCGCCTCCAAATCGCAATCACTTCCTAACCTCCCCCTTTTCATCATATTTGATCACTTTGATTCTCCGTTCTCTTCTCTTATTATTTCTGCTACACGCAAAGGAAGCTCAGTAGGTtgtgctctctttttttgtttccttatCGCTGCCGCTCGCCTGGAGAGTTGACTTCATATTTGACTCGAGCACGCAGGCTTGGTTTTGCGCGCGGCGGCGGCTAGCGCTACCTcatctggaagaaaaaaaaggaagaagcgGCGATATTTGGGTCCAGTTGTTGGGTTTTCTACAACACTTCAAGACTGGAACTTGGTGTGCCGCTCGCCAGTTTGTGTAATCTACACGAGCTCTTGTATTTTCCGCGAGTCTGAACGTCGCTAAGTTATACTGGCCCCGTGTCTGTAGCAGACTCTTGCTCTTCTTTAGTCGTCGTATTtattttccacttttatttttttttttcttccacggCTTTCCTGGATGGATGACTGCAGGCGCCCCTGGACGTGGCCTCTAAGAGCAGGACTGCGATTCGGCTCGTCTTCGTGTCAGTTGTAACCGCTGCCAAGTCCCGAAAGCGGGCTACGCTTCGCCGTCGGCGCGCGACTTTCAGTGGGATAAAAGCACAGGGTGCAGTATTTCTTCGCCCGATCAACAAACCTCGACGTGCTGCGTTGCTTTAGAACCAGGGCCACCAGGACACGGCAgcaacaaaacaagacaaaaagaaaccaaacaaagcaaaacaaaacaaaaaaacaaaaacaaaacggaCGACACAAAGTTGCTGACTGATTAGATATGGCAATGGTAGTGTGGAGAGGCTCCCAGGACGATGTGGCCGAGACGCAGGGCGCCCTCTCATCGCAAGCCCAAGGCGGACTAACCCTTGCGACCCCTCAGCCGGGCCAGCTGAACCTCACGGCCTCGCAGGTCGCGCCTCCGACCCCGCAGACTCCTGTTCAAGGAGCGCCGAATAGCAACGCGCAGTCCACGCCAACGAACCAGACGTCGCAGAGTCAGTCGgacaagcagcagcagcagcacatcgAGTGCGTGGTGTGCGGCGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACATGCGAGGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGCGCAACCTCACATACACGTGCCGCGCCAACCGGAATTGTCCCATCGACCAGCACCACCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGTCTCAAAGTTGGCATGAGACGGGAAGTTTCTCTTTTTGCAGCGGTCCAGAGGGGCAGGATGCCACCCACGCAGCCGCACCACGGCCAGTTCGCCCTGACGAACGGGGACCCGCTGCACTGCCATTCCTACTTATCGGGATATATCTCTCTGCTGCTGCGAGCAGAGCCCTACCCCACGTCGCGCTATGGCAGTCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCGGCGCGCATGCTGTTCAGCGCCGTGGAGTGGGCCAGGAATATTCCCTTCTTCCCCGACCTGCAGATCACAGACCAGGTGGCTCTGCTCAGGCTCACCTGGAGCGAGTTGTTCGTCCTCAACGCGGCCCAGTGCTCCATGCCACTGCATGTAGCTCCTCTGCTAGCCGCCGCAGGCCTCCACGCCTCCCCCATGTCTGCGGACAGAGTGGTCGCCTTTATGGACCACATTAGGATCTTCCAGGAGCAAGTTGAAAAGCTCAAAGCATTACATGTCGACTCGGCCGAATACAGCTGCTTAAAAGCCATCGTGTTATTCACCACGGaTGCTTGCGGGCTGTCAGACGTGGCCCACATCGAAAGTTTGCAGGAGAAGTCGCAGTGTGCACTGGAGGAGTACGTGCGGAGCCAATACCCTAACCAGCCTACGCGATTTGGGAAGTTATTACTACGCCTGCCTTCTCTGCGCACAGTGTCCTCTTCGGTCATAGAGCAATTATTTTTCGTCCGATTGGTAGGTAAAACCCCAATTGAAACCCTCATCCGGGATATGTTGCTGTCAGGGAGCAGTTTTAACTGGCCATATATGTCCATTCAATAAGCAGAAGGAAGGATCGGAAATGGGGGTCCATTAGTTAGCGCTTCTTTTTGTAGAAGAAACCGGCTGTTACACGAGTTTACTTTCACGGAAAAGAGACGTTTTTCATAAATGACTGTGAATCTTCAAATCTGAGACATTTAATGAAAACTACCTGGGGG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0060838 lymphatic endothelial cell fate commitment biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08548 NR2F2, TFCOUP2; COUP transcription factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118768 lncRNA downstream 135618 15939123 ~ 15939329 (-) True G100179
TU118743 lncRNA downstream 211168 15863580 ~ 15863779 (-) True G100154
XR_004578378.1 lncRNA downstream 348590 15690281 ~ 15726357 (-) True LOC113534668
XR_004578377.1 lncRNA downstream 348590 15719157 ~ 15726357 (-) False LOC113534668
TU118651 lncRNA downstream 419160 15653386 ~ 15655787 (-) True G100072
XR_003403526.2 lncRNA upstream 8679 16088944 ~ 16134169 (-) True LOC113534800
TU118884 lncRNA upstream 118229 16198494 ~ 16198698 (-) True G100288
TU118894 lncRNA upstream 152757 16233022 ~ 16233273 (-) True G100298
TU118898 lncRNA upstream 238024 16318289 ~ 16318736 (-) True G100302
TU118903 lncRNA upstream 269192 16349457 ~ 16349787 (-) True G100307
XM_026927603.2 mRNA downstream 575695 15486013 ~ 15499252 (-) True hsf4
XM_026927538.2 mRNA downstream 601932 15471629 ~ 15473015 (-) True LOC113534617
XM_026927032.2 mRNA downstream 720284 15348648 ~ 15354663 (-) False tmem170a
XM_026927644.2 mRNA upstream 501097 16581362 ~ 16610310 (-) True LOC113534689
XM_034304994.1 mRNA upstream 600657 16680922 ~ 16741071 (-) False chd2
XM_034304996.1 mRNA upstream 600657 16680922 ~ 16741070 (-) False chd2
XM_034304995.1 mRNA upstream 600657 16680922 ~ 16741069 (-) False chd2
XM_034304993.1 mRNA upstream 600657 16680922 ~ 16741067 (-) False chd2
TU118530 other downstream 720310 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 1727939 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 2286100 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 2286748 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 2287161 13787657 ~ 13787786 (-) True LOC113534844
XR_004578368.1 other upstream 2006390 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 2107182 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 3270497 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 3899804 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 4873337 20953602 ~ 20966910 (-) True G102566

Expression Profile