RNA id: XM_034305410.1


Basic Information

Item Value
RNA id XM_034305410.1
length 2415
RNA type mRNA
GC content 0.47
exon number 6
gene id si:ch211-212o1.2
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12948587 ~ 12984645 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACATTGACCAGACCGTCAAGAGGAGGAaaacttttccaaaatattCACACAATTTGCTTACACACTAAGCAACGTTACGAGCCAGTTTTACACTCCGGCCTTTAGGCGTCTCCCGACTGTAAAAAGCCTGTAAAAGAAGAAACGTGATGAATTGCACATACGCGAGATCATTTATGTGACGGACCACTTGGTGCGTAGCTGTTTTAGTTCCGGGTGTGTGTAGCTCCGTTAGGCTAGCCACCGTTAGTGACTGTAGGTGTGTCACTGTACAGCAGCGCTACTTCCCACCGAGCGCATAGGTACAAAGTAGCCATTTATGCATCGTACCTGAGAAGAAGTTCCGTGACGAGGGAGAGAATGGCGGCAGCGTTACTGTCTGAGACAGAGATCCGGCACCGCTCTATGGCGGAAGAGGACCCGAACGGGAACGAGCACGGCGCGGCCGCCCGCAGTAGCGCACCCCGCTGGGGACCGCAGCACGCCGGGGCCCGCCAGCTCGCCCAGCTCTACTCCCCTGGAAAAAGGCTACAGGAGTGGGTCTGTGTAATCTTGTGCCTCTCGCTCTTCGCTGTCaacttcttcttcctcctcatcaACTTCTCCGGAGTGCCCATCTACAGAATCATCTTTGGCATTGTGGCCGGTATCGTGACTGCAGACTTTGCCTCTGGAGTCGTGCATTGGGGAGCTGACACCTGGGGCTCTGTGGACATCCCCATCATTGGGAAGGCGTTTATCCGTCCATTCCGGGAGCACCACATCGACCCTACGGCCATCACGCGGCACGACTTCATTGAGACTAATGGGGATAACTGCATGATCACCATCCTGCCTCTCGCCCACATGGCCTACAAGTTCCTGTCCTACACACCAGATGCCCTTGCCGAGTCCTACCCCTGGGACTGTTTTGTGTTTGCGCTTGCTGTCTTTGTGACGATGACCAATCAGATCCACAAGTGGTCACACTCCTACTTCGGCCTGCCACGATGGGTCACTCTGCTGCAGGACTGCCACCTAGTGCTGCCCCGCAAGCACCATCGTATCCACCATGTGTCCCCTCATGAGACCTACTACTGCATTActacagGTCGAACCATATCAAGGTTTGCAAACCAATGTGGCCAGATCAGGGACTCCTGGACCAATTTTCTAATATGAAATCTTTTTTCTCTACACTTTTCTTTTGTGGATTGTGTCATGTAATTTAATTGCAGCACCAATATTATATAGCCCCAGCCCTCCATCGTAGTACGCTTTTCTGAAATATCATATCCATCATCACTGTTATAAGTGGTGAACACTTCAGCAATTCATCTGTTATTAATACATTTCTTAGTTAAAAAGTATTAACTTGTTAATAGGTTAATGGAtggtaaaatataaaacatccCTTTTACcatttgtttgattgattgaccTCTCTATTGGATgctttattgttgtgttttgttttttttttaaaaaaaatcatagaaaGTTTCATACTTTCTAATACTATTTTGCTGACACTAGGAAAGCCTCAGCAAAACTAAATATCATGGTAAATATTTTTGCTATATTGCCCGCCCATGTGTAAGtccatattttccttttttgttgtaaattagaaatattaaattTCTTTGGAATTACAAGCATTACCCTGTAATAGCTGGAACGCTcagtatgcagtgtgtgtgtgtctctgagagAGCTGAGTGGGGATGCTTGTGCGTCACCTTGTGCCCCTGTGGACAACAGATGTGAGTGCGGGGGTGGAGCGCgcgtgtgtttgagagagaccGGGAAAGCAGGTCCTCCTGTCACCGTCTCCCTATTCCGAGATTGTTGAGGAGGCATGATGAAGAGGAAAGGGGAGGTCTTTCTCAAACAATCATTTATCCCCTGTACcagtctctgtttcttttttgtttgtttttttttactatcacccctatttctctctctttctccctctcattcactatctctctctctctctctctctctgtctcgttcTATGGGAAGTCTCTCAGCGTGGCTGGGGCTCCTCCACCCTCTCCACCAGGTCTCCGGGGCCCCCAGCTTGCCTTTGTATGTGCAACTGGCTGACAATCTCCATGTATATTTAATGCTAACCTGCTGTCAGTGCTAACAAACAGGCCtgcatggagagagacagattgaaAGGAGGGAGACAAAGAGGAGTAATCAAACAACAAGATGCGCTACACTGGTCTCCTCTTACACAGAGAGGACCACTgcagagaccacacacacacacacacagctagcaaGGGACATGACATAGGATATGTGTACATGGAGTGGGATGTTTAGGTTAGTGCAAATCAGGGGTTAACATGGATTCATCATGCATGCTTGATCTTTGGAGGGaagtgcgtgtgcgtgcgtgtgtgtgtgtatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116922 lncRNA downstream 114008 12838220 ~ 12838542 (-) True G98607
TU116902 lncRNA downstream 148942 12802798 ~ 12803608 (-) True G98588
TU116852 lncRNA downstream 178343 12763899 ~ 12774207 (-) True G98552
TU116862 lncRNA downstream 178343 12773138 ~ 12774207 (-) False G98552
TU116850 lncRNA downstream 187269 12763899 ~ 12765281 (-) False G98552
TU117108 lncRNA upstream 42813 13027458 ~ 13028597 (-) True G98767
TU117117 lncRNA upstream 144555 13129200 ~ 13135173 (-) True G98776
TU117133 lncRNA upstream 197698 13182343 ~ 13182550 (-) True G98790
XR_004578307.1 lncRNA upstream 326750 13311395 ~ 13312346 (-) True LOC117597528
TU117412 lncRNA upstream 326760 13311405 ~ 13318008 (-) False LOC117597528
XM_026927457.2 mRNA downstream 38304 12904033 ~ 12914246 (-) False psme3ip1
XM_026927455.2 mRNA downstream 38305 12904033 ~ 12914245 (-) True psme3ip1
XM_026927456.2 mRNA downstream 38307 12904033 ~ 12914243 (-) False psme3ip1
XM_034305429.1 mRNA downstream 38368 12904033 ~ 12914182 (-) False psme3ip1
XM_034305441.1 mRNA downstream 189911 12748014 ~ 12762639 (-) False bbs2
XM_026927149.2 mRNA upstream 3700 12988345 ~ 13137217 (-) False znf423
XM_026927148.2 mRNA upstream 3700 12988345 ~ 13137217 (-) True znf423
XM_026927150.2 mRNA upstream 3700 12988345 ~ 13137216 (-) False znf423
XM_034305370.1 mRNA upstream 390214 13374859 ~ 13395693 (-) True lonp2
XM_026927072.2 mRNA upstream 413630 13398275 ~ 13404730 (-) False il34
TU116638 other downstream 528572 12421102 ~ 12423978 (-) True akip1
XR_003403510.2 other downstream 547269 12397687 ~ 12405281 (-) False znf143b
TU116624 other downstream 638025 12312082 ~ 12314525 (-) False admb
XR_004578339.1 other downstream 1341586 11588001 ~ 11610964 (-) False arntl2
XR_003403495.2 other downstream 2657727 10268477 ~ 10294823 (-) False ttc38
TU117111 other upstream 61178 13045823 ~ 13052311 (-) True G98770
XR_003403539.1 other upstream 452256 13436901 ~ 13436975 (-) True LOC113534846
XR_003403499.2 other upstream 566035 13550680 ~ 13562574 (-) True c6h15orf39
trnaq-cug_10 other upstream 660764 13645409 ~ 13645480 (-) True trnaq-cug_10
XR_003403538.1 other upstream 780281 13764926 ~ 13765056 (-) True LOC113534845

Expression Profile