RNA id: XM_026927480.2


Basic Information

Item Value
RNA id XM_026927480.2
length 2286
RNA type mRNA
GC content 0.49
exon number 16
gene id znf143b
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12396507 ~ 12405281 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTGTCATACTACATCCCGCCCATTGACAGGCATCACGCGGTTATTCATGTTCCGGGGTTGTGGTCTCTGCAGAGCGTTTCCTGCCCTGATGCATGGCGGTCGAACGAAGGGATTGTTGGAAAATTTTTGGAGGTAGACCATGCTCTTGGCCCAGGTGAATCGGGACACCCAGAGCATGGAGTTCCAAAGTGTTGAGGGTGACCCACAGCAGGTCACCCTTTGCCTCACTGAGGCTGTGACAGTTGCAGACAGTGACCACATTGAGGCAATGGATACAGTGAGTTTGCAGGCAGTGACTCTGGTAGATGGCTCCACTGCATACATACAACACAGTCCTAAAGataacAAGATAATGGAAGGACAGGTGATCCAGTTGGAGGATGGATCTGCGGCGTATGTGCAGCACCTCCCAATGCCGAAAGCAGGTGGAGAAGGTCTAAGACTAGAGGATGGCCAAACTGTGCAACTAGAGGATGGGACAACGGCATACATTCATGCACCCAAAGaAACATATGATCAGGGTGGATTACAGGCTGTCCAGTTGGAGGATGGCACGACTGCCTACATCCAGCACATGCCCCAGTCGAGCACCATTCTGGCTATTCAGGCTGATGGCACAGTGGCAGACCTGCAAGCTGAGGGCACTATTGACCCTGACACCATCAGTGTGCTGGAACAGTATTCTGCCAAGATGGAGGGAACAGAATGTGGCACAGGGCTGCTTAGTAGAGGCGACGCTGATGGCAGTGTGCATATGCAGATTGTACTCCAGGGTCAGGAGGGCAGGTCTCCAAGAGTGCAGCATATTGGGGAAAAGGCCTTTCGCTGTGAACATGAGGGCTGTGGAAAACTCTACACAACAGCAcatcatttaaaaGTACATGAACGATCACATACTGGGGATAAACCTTACATATGCGATCATCTCGGATGTGGAAAAAAGTTTGCGACAGGATATGGCCTAAAAAGTCATGTTCGAACACACACTGGTGAAAAACCATACCGCTGCCAGGAGCTCAACTGCCTTAAGTCTTTCAAGACATCTGGAGACCTACAAAAACACACGCGAACACACACTGGGGAGAAGCCTTTCAAGTGCCCATTTGAAGGTTGTGGGAGATCTTTCACCACCTCAAATATTCGAAAGGTTCACATCCGAACACACACTGGTGAGCGGCCGTACTACTGCTCTGAACCCAACTGTGGAAGAGCTTTTGCCAGCGCCACCAACTACAAAAACCACATGAGGATCCACACAGGTGAGAAGCCATATGTGTGCACTGTGCCTGGCTGTGATAAGCGCTTTACTGAATACTCCAGTCTCTACAAACACCATGTGGTCCATACTCCCTGCAAGCCCTACAACTGCAACCACTGTGGGAAGACCTACAAGCAGATCTCCACGTTAGCCATGCACAAACGCACGGCACACAATGACACCGAGCCCAttgaggaggagcaggaggccTACTTTGAGCCACCTACAGAGGCCATTGATGACCCTGCATTAACATTTACCCCTGCTGTGgtggaggaggatggaggatCAGAGCAGGTTTCAGCAGGAACAGAGATCATGAGTCAGCAGCACGTAGCACTCATCTCTCAGGACGGCACACAGCAGGTTTTTTCTCAGGCAGACGTTCAAGCAATGAGTGGCACAATAACGATGGTAACACAAGAAGGAACAACTATAACCATCCCTGCCCATGAGGCAATGCTTTCCTCCGGAGAAGGTCATTCTGTCACCATGGTTTCTGCAGATGGCACAGAAGGACAGGTGGCAATTGTGACGCCAGATCTGTCCGTGTTCCAGACTGAGGACGGAGAGCTGGTGCATGAACAGCAGCAGCGGCCGGTGGTATCCACCAGCCCACATCCAGTTACTCTGCTGGCTACCTCTAACGGCACACACATTGCTGTGCAgcTCAGCGATCAGCCTTCGCTGGAGGAGGCCATCAGAATCGCATCACGCATTCAACAAGGAGAAACCCCAGGCCTAGATGATTAAAGCATGACCTTCAATTAAGCAAAatcaccatgtgtgtgtgccgGATGTTCGTGCATGTGCTTGCAGTGAACAACTGAGAAAGTCAAGTATCCAAAAAAATTTGATAGCATCATGATTGCTCTGTTTGAAGAGGactgaatatatttttgtgtggatttatGTACATAACAATGTTTTGAAACTGGAGTTTttgctgtaaatatttatttgattcttCTATTGAAATACTTGACTTTTTAGGatcttaataaatgaaaattgaacAACATTCCA

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K20828 ZNF143_76, STAF; zinc finger protein 143/76

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116616 lncRNA downstream 120278 12275722 ~ 12276229 (-) True G98343
TU116615 lncRNA downstream 121096 12274275 ~ 12275411 (-) True G98342
TU116261 lncRNA downstream 525398 11870979 ~ 11871109 (-) False sspn
TU116205 lncRNA downstream 643309 11752525 ~ 11753198 (-) False plekhg7
TU116156 lncRNA downstream 703428 11690997 ~ 11693079 (-) True G97931
TU116665 lncRNA upstream 72622 12477903 ~ 12478277 (-) True G98383
TU116849 lncRNA upstream 306813 12712094 ~ 12713957 (-) True G98551
TU116867 lncRNA upstream 323163 12728444 ~ 12729493 (-) True G98555
TU116875 lncRNA upstream 333668 12738949 ~ 12742224 (-) True G98563
TU116850 lncRNA upstream 358618 12763899 ~ 12765281 (-) False G98552
XM_026927777.2 mRNA downstream 845 12388873 ~ 12395662 (-) True wee1
XM_026927106.2 mRNA downstream 11154 12363559 ~ 12385353 (-) True swap70b
XM_026927616.2 mRNA downstream 51055 12311822 ~ 12345452 (-) True admb
XM_026927614.2 mRNA downstream 81988 12311822 ~ 12314519 (-) False admb
XM_026927102.2 mRNA downstream 99878 12282297 ~ 12296629 (-) False ampd3b
XM_026927498.2 mRNA upstream 15156 12420437 ~ 12423968 (-) False akip1
XM_026926946.1 mRNA upstream 53234 12458515 ~ 12463241 (-) False tph2
XM_026926945.1 mRNA upstream 53234 12458515 ~ 12463241 (-) True tph2
XM_026927754.2 mRNA upstream 60865 12466146 ~ 12476898 (-) True tbc1d15
XM_026926986.2 mRNA upstream 76950 12482231 ~ 12489322 (-) True has3
TU116624 other downstream 81982 12312082 ~ 12314525 (-) False admb
XR_004578339.1 other downstream 785543 11588001 ~ 11610964 (-) False arntl2
XR_004578315.1 other downstream 2101684 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 2101684 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 3918271 8468301 ~ 8478236 (-) False LOC113534821
TU116638 other upstream 15821 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 640542 13045823 ~ 13052311 (-) True G98770
XR_003403539.1 other upstream 1031620 13436901 ~ 13436975 (-) True LOC113534846
XR_003403499.2 other upstream 1145399 13550680 ~ 13562574 (-) True c6h15orf39
trnaq-cug_10 other upstream 1240128 13645409 ~ 13645480 (-) True trnaq-cug_10

Expression Profile