RNA id: XM_026927495.2


Basic Information

Item Value
RNA id XM_026927495.2
length 2265
RNA type mRNA
GC content 0.41
exon number 5
gene id nutf2
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15105315 ~ 15119718 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAATGTGCGTTATTAGTGCGCATGCGCAAAAGAGCAGGCGGCTGAACTTCTCCACCGCGCGCTGTAATCGCCATAACTGGACCCGAGGATAGCTACGGTTAGGGCTCGCGGAGTGCCTGTAGCTGGGTGAATCAGGATGGGAGACAAGCCGATCTGGGAACAAATAGGATCCAGCTTTGTTCAACATTACTATCAACTGTTTGACACGGACAGAACTCAGCTTGGATCAATATATATTGATGCCTCATGCCTTACGTGGGAAGGACAGCAATTCCAGGGAAAAGCAGCGATTGTCGAGAAACTCTCTAGCCTGCCCTTCACAAAAATAGcccacagcataacagcacAAGATCACCAGCCCACTCCTGACAGCTGCATATTGAGTATGGTAGTAGGACAACTAAAAGCAGATGATGATCCCATCATGGGATTCCATCAGAGCTTCATCCTGAAGAACATTAACGATGCGTGGGTGTGCACCAACGACATGTTCCGCCTAGCAATCCACAACTTTGGCTAAAAAGCACCACGGCTGTCGGGGGAAATGGGGGAAGGTGGAGAACGGGGCATATCGCCCCCCAGCGATGCCTGAACCTCAGTCTGCCCTTCATTCATCTTTGAGATTCAGCACCGGATTCCAAGAAGTCAAATCACAGataacacacaggcacacagtaGCGCCTCTGCTCCAGACATGAGAAGTGTTTCTTTGCTGAAAGCCCACAGTTCCATCAAAGTGACCCCTTTCCCCTCTGCTGATGTGCATGATGATGGCGAGCTCGAATATCAGAGGACACTgacctgggaaaaaaaaaaaaacagacatattaACATACCTTCTGCCAGTTActactatttacattttagttccTGAGTTCGACTTTGAATTAATAGCTGTCTTAACTGCCTTTCATTGCTTTAGTACTTATTGTGTTATCTGCTTGCTTTTAGAGTTTGCTTCttggcacttttttttcttcttccttttccctCTTGAACATTGGAGCCTCCATTCATTGTGATGTCAGGTTGCTCTAGCTATCCAAAGAAACGTTAAAGTAAACACCCCCCCCAGATCCCCCACCCCTTCAGACCAGTGTGCTTCTCATCTTCTGCTCACTGCTCTCTGTGACAATAATTACCAagccacaagacacaataaaaCCTTTGACTTTTTCTTAACCATTGCATCATCTTGTTCCTCCCACTGTCTGGTCTTACATatgtcttttttgtttatgtataaCCAGTTTCTTAATGCTACTGGAAATCGTTTTGGAAATAGTATTccttaatgaagaaaaagaattgAAGAATCTGGTAATCTTCTATCAAGAGTCATTTGCCTAACTAGCAGAATAAGCAGTCGATCCTCTAATATTATATGTATTTGGTTTTCTAATGTAGTAATGACTTCGCTATTGTATTTGTTTTGCATGCATTACAGATATAAATTCAGTATTGGAAACACTGAACCAATAGTTATATCAAACTTCCTTTGTTCGATAATGATAACGGACTAAAGAGGAAGATAATATTGTGGAGACACAAGAGGTCTTGTGAAAAAATCCTTCTGGCTAGAAATATTTCTGTGAAGGTAGAAGACAGTCATTCTTCTATTGCTGCACGCTTAAGTAGATAATTATGTGGAAATGGTTTGTGCTTAAATAAGTACTAATACCTTGCAGGCTGAAATATCACTGTGCCTCCATCTGACTACTCCTCATGTACACCAACTCACCAGTAGGTCTTATtatcaaataatattaatgaagaCTAATTGTAACTATTTGGATTTGTGAAAGTTTGTTTAGACAGTGAAGAGAGGCTTTGAGGAAAAATCAGTTTACAGGAGCAATAAAGTGATGTAAAAGGATTACATGTAAGCTATTCCTATTGGCATGACTATGACTTTGAGCTGACTGTACAGATGTTGGAAATAGCCTTAACTGTGGATTGTGTCCTCTTGCTTAAGCACTCAGGTGTTTAAAGAAGTGTTACTGGAACCTCAGATAGAAGCTGACGTGATTTACCCCAAGTCTCGTTTGCTACATTTCTTTCTAGTCTCATGcaaatgatttgttttgttatacTCTGCATGCGTGCTCTGCTTTATGGAGATTCACCTCTCCAGTAAGTGGTAgcagaagaaggaaaaagaaagtattttccttttaaaacaaaagcaacaaaTGGCGTGTAATACGGACAGTATTTCAATTTCTGCCATGTAAGTTATATGGAAATAAAGGCCATCAAATCGA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117973 lncRNA downstream 456322 14648078 ~ 14648993 (-) True G99493
TU117962 lncRNA downstream 501843 14601223 ~ 14603472 (-) True G99482
TU117933 lncRNA downstream 569305 14533820 ~ 14536010 (-) True G99453
XR_003403487.2 lncRNA downstream 585531 14510924 ~ 14519784 (-) True LOC113534271
TU117912 lncRNA downstream 652208 14448856 ~ 14453107 (-) True G99433
TU118323 lncRNA upstream 29685 15149403 ~ 15150315 (-) True G99780
TU118318 lncRNA upstream 40485 15160203 ~ 15168426 (-) True G99775
TU118330 lncRNA upstream 51593 15171311 ~ 15173434 (-) True G99784
TU118350 lncRNA upstream 56457 15176175 ~ 15180912 (-) True G99801
TU118481 lncRNA upstream 177887 15297605 ~ 15299578 (-) True G99915
XM_026927338.2 mRNA downstream 205 15075874 ~ 15105110 (-) True edc4
XM_034305053.1 mRNA downstream 32820 15043298 ~ 15072495 (-) True nrn1la
XM_034305455.1 mRNA downstream 78447 15018958 ~ 15026868 (-) True pskh1
XM_034305368.1 mRNA downstream 90178 14988788 ~ 15015137 (-) True mbtps1
XM_026927573.2 mRNA downstream 127165 14969784 ~ 14978150 (-) False slc38a8a
XM_026927199.2 mRNA upstream 1329 15121047 ~ 15132206 (-) False tsnaxip1
XM_026927200.2 mRNA upstream 1329 15121047 ~ 15130391 (-) True tsnaxip1
XM_026927748.2 mRNA upstream 57493 15177211 ~ 15200248 (-) True pard6a
XM_034305486.1 mRNA upstream 228930 15348648 ~ 15357563 (-) False tmem170a
XM_026927032.2 mRNA upstream 228930 15348648 ~ 15354663 (-) False tmem170a
XR_003403523.2 other downstream 758307 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 1316468 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 1317116 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 1317529 13787657 ~ 13787786 (-) True LOC113534844
XR_003403542.1 other downstream 1318113 13787134 ~ 13787202 (-) True LOC113534850
TU118530 other upstream 227448 15347166 ~ 15354637 (-) True tmem170a
XR_004578368.1 other upstream 2966937 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 3067729 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 4231044 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 4860351 19980069 ~ 19980259 (-) True LOC113527007

Expression Profile