RNA id: XM_026927540.2


Basic Information

Item Value
RNA id XM_026927540.2
length 1168
RNA type mRNA
GC content 0.44
exon number 5
gene id si:ch211-245j22.3
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11578245 ~ 11581884 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATTACATTTGAGGCCCCCCAACGTGCTTGTGCCCCCTGCTAAGAGATTAGGTTTGCCTAATTTCATGGCTGCAGGAGGGAATCTGTAAGAGTGATTAAGCTTGAGAGAGGTAAGCTGGGCTTTGGTATATAAACGTGTGTGCCTGAAGTAGCTGATAGTGGAACACAAGTGAGGATGGGACAGGCTGCGACTTTACCCTGCAGAAGCGGAGGCACCTACGTCACAGAACTTTATGAATGGTTTAGGAAGTTCTTAATCGAGTGTCCGAGTGGCCTGATCACTCTGCATGAGTTCAGACGTCACTTCTGTGATGGAACTGTGGGACTGGAGTCTGCAGAATACGCTGAGCAGATCTTCCGTACACTAGACAACAACGGGGATGGTTTCGTTGACTTCCGAGAATATGTGATGGCCATTAGCATGCTGTTAGAAGGCTCATCAGTGGAGAAGCTTCGCTGGTCATTTAAACTTTATGACAAGGACAAGGATGGAGCCATAACACGAGCAGAGATGCTTGACATCATGCAGGCTGTGTATAAGATGAGTGTTGCAGCCTCTCTAACCAAACCTAATCCACTGACTGCTGAGGAATGCACCAACAGGATATTCATACAACTAGACAAAGACAACAATGCCATCATCAGTCTGGAGGAGTTCATTGAGGGGGCACTGGATGATGAGTGGATAAGAGAGATGTTGGCGTGTGACCCCAACACTGTAAAGGTAGAGCGACCTCGTAAGGGTTCCTCTGGATCTAAAGCATTGGGTTCATCTGAGCCTACAGAATGAAGGATGTCCAATCTGCTGGAGCAGTAAAACAGTATTTCTGGCACTCCCCCTACGCCACACATCTAAAGGGTtactgctctaacacacccagaCCCTTGAGATTTAActtttttagattaataaacactaaaatttGAAGGCATGATGATGAAAGACCATGTTTTGGAAACACTACACCAAAGGCAGCTTTCTGCTGGGTGTGtaatgttcaataaataaaataaaattattgcgTTGATAAATGTGTCTGACCCTCTCACAGTTCTCATGAGACTGTATTGTTTGCTATGTACTGTGATGCTAAAGCATTTTAGGATGACTATTATGTCATATTTGATATAAGAGGCTGTAGAGACATCAAGACATTTCAGCTTTAAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116033 lncRNA downstream 101131 11396116 ~ 11477114 (-) True G97831
TU115775 lncRNA downstream 387405 11190641 ~ 11190840 (-) True G97607
TU115769 lncRNA downstream 390222 11187495 ~ 11188023 (-) True G97601
TU115763 lncRNA downstream 404072 11172687 ~ 11174173 (-) False pdf
TU116158 lncRNA upstream 98845 11680729 ~ 11696665 (-) True G97932
TU116155 lncRNA upstream 109113 11690997 ~ 11693079 (-) False G97931
TU116156 lncRNA upstream 109113 11690997 ~ 11693079 (-) True G97931
TU116205 lncRNA upstream 170641 11752525 ~ 11753198 (-) False plekhg7
TU116261 lncRNA upstream 289095 11870979 ~ 11871109 (-) False sspn
XM_034305373.1 mRNA downstream 1257 11543660 ~ 11576988 (-) True ppfibp1b
XM_026927037.2 mRNA downstream 35864 11537242 ~ 11542381 (-) True endouc
XM_026927504.2 mRNA downstream 42581 11508775 ~ 11535664 (-) True polr3b
XM_034305557.1 mRNA downstream 71555 11489642 ~ 11506690 (-) False rfx4
XM_026927539.2 mRNA upstream 4173 11586057 ~ 11610963 (-) True arntl2
XM_026927475.2 mRNA upstream 90497 11672381 ~ 11675853 (-) True si:ch211-219a15.3
XM_034305446.1 mRNA upstream 171218 11753102 ~ 11769985 (-) False plekhg7
XM_034305445.1 mRNA upstream 171218 11753102 ~ 11769985 (-) False plekhg7
XM_026927219.2 mRNA upstream 171218 11753102 ~ 11769985 (-) False plekhg7
XR_004578315.1 other downstream 1283422 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 1283422 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 3100009 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 3964149 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 4420757 7147944 ~ 7157488 (-) False LOC113534453
XR_004578339.1 other upstream 6117 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 730198 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 815803 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 839218 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 1463939 13045823 ~ 13052311 (-) True G98770

Expression Profile