RNA id: XM_034305426.1


Basic Information

Item Value
RNA id XM_034305426.1
length 1835
RNA type mRNA
GC content 0.44
exon number 10
gene id slc38a8a
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14969784 ~ 14978150 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTACCCGTTCACCCTCTTACCTAACCTCCCTCCTGGTGAACTGTGTAAGTGCGAGCGCTTGGAGTTCCGCGGCCTGTCAGGACTCAGGAATGGAGGCGCAGACAGGAGGAGACGCAGGTGTTTTCGACAAGCCGAGAATGAGCACTCCCAGCCCGAGCCCGAGGCTGGGCTTCTGCGGAGCCGTGTTCATCATGCTGAAGTCCGCTCTGGGTGCAGGACTGCTCAGCTTCCCCTGGGCTTTCTCCCGAGCTGGAGGAGTTCACACTGCAGTCACAGTGGAGATGTTTTCTCTCGTATTCCTCGTTAGTGGACTGGTGATCCTTGGCTACTCATCCTCCATCAGTGGCCAGAGCACGTACCAGGCTGTGGTGGGGCACCTCTGTGGGCCTGCTATAGGCAAACTGTGTGAGCTCTGCTTCGTCCTCAATGTCTTCATGATCTGTGTGGCATTTCTGGTTATATTGGCAGACCagcttaaaaaatATTCAGCTGGGAACGCGATGCCTTATCACTGGTACACAGACCAGAGGTTTACGCTTTTCCTTGTGTGTCTCTTTGTCATTCTTCCTCTCTCAATTCCTAAAGAGATTTGGATACAGAAGTACACCAGCGCATTAGGCACAGTAGCAGCCACCTATTTGACTGTAGCCATTGTTGTAAGATATTACACAAGAACAGTCCCTGAGGTCCACCTGTCCCCTTCATACAACACTGGGATGGGCTTCTGGGCTTCCATATTCAACGTCATCCCCACAATCTGCTTTGGCTTTCAGTGTCATGAGTGCTGCGTTGCCGTCTACAGCAGTTTGGGGAATAAGAAGCTCTCCAACTGGGTCATAATCTCTTTATTGTCTATGTTCATCTGCCTTGTTATCTACACTCTAACTGGTATCTATGGGTATCTCACCTTTGGGAGGAATGTTGCTGCTGATGTTCTGATGTCATACAGTGGAGATGATGTCCTTATGATCATTGCAAGGTTACTCTTTGGGGTCTCCATTATCACCATCTACCCCATTGCTCTATTACTTGgaagGTTGGTGATTCAGGATCCATTACTGCGGCACAGAGAGACTGAGTCTTACGAGACCTGCATCAGAGTTGCCTTGACTGCAGTGTGGATCATCATCACTCTCCTCATTGCTCTGTTTGTTCCAGACATCAGCAAAGTCATCAGCATTATTGGTGGCATTAGCGCATTCTTCATCTTTGTCTTCCCAGGGCTTTGTTTAATATTTGCCATGCAATCTCAGCCAATGTCAGCAAGACTCAGgtGGATTTTAATTGCATGGGGAATGATCACAATTTTATTTGGCACATTCATTTTTGGGCAGAGCACTTTCTTTGCCATTATGCAGGTCTTTCATAAGCTATGATTCTTGTCAGCATTTGAAACTCTACCTCTAAACGGAACTCTTCTGTTTTcaattaaacattacaaaagtATTAATGTAcctaattttacaaaatattgcTGGGAAACCCATGAGTATATTAATATATGGTGCTATAACATCTTTTTTATGGTAAGGTTTTATGATATGCAAAATTGTTAGTAAGGTGGTGAAATCCTTTGAAACAATTTAACAAGGCCTTAAAATCTTTGGAAAATAGTTATGTATTAAGCCTTAGTCTTTTGTAGCgctattgtctttttttttttttttaccctttttgAAACTTTAGCTTCCCTATTGTTCCAAAATTCTGTTAGTAATAGTGTGTTGAATTGTGAAATTATGGCAGTGTACACCTTGCTGCTTTCACTGTTCAGCAATATGAGATTTCCATATAAAAtgattctgtaaaataaaattaggcTTTGGagccactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117973 lncRNA downstream 320791 14648078 ~ 14648993 (-) True G99493
TU117962 lncRNA downstream 366312 14601223 ~ 14603472 (-) True G99482
TU117933 lncRNA downstream 433774 14533820 ~ 14536010 (-) True G99453
XR_003403487.2 lncRNA downstream 450000 14510924 ~ 14519784 (-) True LOC113534271
TU117912 lncRNA downstream 516677 14448856 ~ 14453107 (-) True G99433
TU118323 lncRNA upstream 171253 15149403 ~ 15150315 (-) True G99780
TU118318 lncRNA upstream 182053 15160203 ~ 15168426 (-) True G99775
TU118330 lncRNA upstream 193161 15171311 ~ 15173434 (-) True G99784
TU118350 lncRNA upstream 198025 15176175 ~ 15180912 (-) True G99801
TU118481 lncRNA upstream 319455 15297605 ~ 15299578 (-) True G99915
XM_026927774.2 mRNA downstream 188231 14771280 ~ 14781553 (-) True pnp6
XM_026927484.2 mRNA downstream 209290 14748622 ~ 14760494 (-) True calb2a
XM_026927444.2 mRNA downstream 227104 14735413 ~ 14742680 (-) True got2a
XM_026927554.2 mRNA downstream 234629 14730120 ~ 14735155 (-) True si:dkey-12e7.4
XM_026927725.2 mRNA downstream 240178 14719885 ~ 14729606 (-) True syt19
XM_034305368.1 mRNA upstream 10638 14988788 ~ 15015137 (-) True mbtps1
XM_034305455.1 mRNA upstream 40808 15018958 ~ 15026868 (-) True pskh1
XM_034305053.1 mRNA upstream 65148 15043298 ~ 15072495 (-) True nrn1la
XM_026927338.2 mRNA upstream 97724 15075874 ~ 15105110 (-) True edc4
XM_026927495.2 mRNA upstream 127165 15105315 ~ 15119718 (-) True nutf2
XR_003403523.2 other downstream 622776 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 1180937 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 1181585 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 1181998 13787657 ~ 13787786 (-) True LOC113534844
XR_003403542.1 other downstream 1182582 13787134 ~ 13787202 (-) True LOC113534850
TU118530 other upstream 369016 15347166 ~ 15354637 (-) True tmem170a
XR_004578368.1 other upstream 3108505 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 3209297 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 4372612 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 5001919 19980069 ~ 19980259 (-) True LOC113527007

Expression Profile