RNA id: XM_026927644.2


Basic Information

Item Value
RNA id XM_026927644.2
length 573
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC113534689
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16581362 ~ 16610310 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCAGCTGGTGATGAAAGCTTCCTATTGGCTAGGAGAAATAATGGAGCAGCAACAGATCAATTGGCTGTgcccaaaacaacaaaatacagGCTACAAGGGATTTATAAAATTGGAAGGTACTCTTCCTAGAACATCTGCCTACAGAAGGAACGTCTTGAAAAGAACTCATTTTACAGAAGGACATGTGGTCAATAGCCAAGGAGAGAAAAGGAACCTGGAGGGAGAAAAGGATTTTAGAGATGAAGAGGTGGAGAACTGTGGGCAAGAGGAGAGAACAGGAGAAAATGGCAGCCAGGGTAGAGCAGGGAGAGAGGAAAGCCAAGAGGAATGTACAGGAAAGGACAGGAGACAAAAGGAGACTGCAAAAGGCAAGAGAATACAGGAAAACGCTGGAAAGGAGAGGGGACAGGAGAAAAGAGATGAGGAGGAAAGTGCAGAAGAGGGGAGAGGACAGGAGGAATATGAAGAAAATTGGAGAGAGGACCAAAGAGGATCTCTAAGAGAAACTAGACATGAAAATCATCTTATGTCCTTGAAGACATGTTACTACTGAGATACCAGtcatcctgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118920 lncRNA downstream 110748 16470357 ~ 16470614 (-) True G100324
TU118919 lncRNA downstream 111102 16469648 ~ 16470260 (-) True G100323
TU118918 lncRNA downstream 116320 16464830 ~ 16465042 (-) True G100322
TU118911 lncRNA downstream 196574 16384557 ~ 16384788 (-) True G100315
TU118905 lncRNA downstream 224547 16356598 ~ 16356815 (-) True G100309
TU119003 lncRNA upstream 5598 16615908 ~ 16616224 (-) True G100396
TU119004 lncRNA upstream 44630 16654940 ~ 16655237 (-) True G100397
TU119006 lncRNA upstream 47336 16657646 ~ 16657909 (-) True G100399
TU119009 lncRNA upstream 55527 16665837 ~ 16666054 (-) True G100402
TU119012 lncRNA upstream 57888 16668198 ~ 16668540 (-) True G100405
XM_026927326.2 mRNA downstream 497749 16074947 ~ 16083613 (-) False nr2f2
XM_026927325.2 mRNA downstream 501097 16074947 ~ 16080265 (-) False nr2f2
XM_026927324.2 mRNA downstream 501097 16074947 ~ 16080265 (-) True nr2f2
XM_026927603.2 mRNA downstream 1082110 15486013 ~ 15499252 (-) True hsf4
XM_026927538.2 mRNA downstream 1108347 15471629 ~ 15473015 (-) True LOC113534617
XM_034304994.1 mRNA upstream 70612 16680922 ~ 16741071 (-) False chd2
XM_034304996.1 mRNA upstream 70612 16680922 ~ 16741070 (-) False chd2
XM_034304995.1 mRNA upstream 70612 16680922 ~ 16741069 (-) False chd2
XM_034304993.1 mRNA upstream 70612 16680922 ~ 16741067 (-) False chd2
XM_034304992.1 mRNA upstream 70612 16680922 ~ 16741067 (-) True chd2
TU118530 other downstream 1226725 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 2234354 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 2792515 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 2793163 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 2793576 13787657 ~ 13787786 (-) True LOC113534844
XR_004578368.1 other upstream 1476345 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 1577137 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 2740452 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 3369759 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 4343292 20953602 ~ 20966910 (-) True G102566

Expression Profile