RNA id: XM_026927741.2


Basic Information

Item Value
RNA id XM_026927741.2
length 4259
RNA type mRNA
GC content 0.44
exon number 9
gene id dennd11
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14335936 ~ 14347008 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAAAACAGTGTCGTTTCCCGGCCGTGTCCGGTTTCTTCGTCTCACTTCGTGCATATTCGGAACGTGTCAAGCTGCAGACATGTTTAATTTCAGAATTCGAGGGGTGTTTTACCGTGATAGAACCAATTAAGTCTGTCAGCACCGTCGAGACGACGCTTATTCCCGACTCTCTCTCTTCAGCAGCGAAGACGCGATGATGGTGGAGCAGTCGGACCGAGCTCCGCTGCTCGACTGGGAAGAGGAGGTCGGGCGGGCCGAACCGAGCCCCGCCATGCCCGCTCCTCACAGCGGCGGATTCCTGGCCACAGACCCGCCAGACCGCTGTCCTCCGAGCAAAAATGGCGCGAATCCCGGCTGGAGCGCGAGCCCGGgaggtggaggtagtgtaacAGCTGTTAAAGGCAGGGGCAGGAGCACGCGCCCTGGGCCGGAGGGGGATGCTTATGCTTCAGGCACGGATGAGGAAGGAGACTGCGCCTTCCCCGGACCCTCCATCAAAACCCGCGCAGTACAGGGGTGGGAAGAGAAAGATCAGATTGTTGCTGTGTTCGTGGTGACCTTTGACACGAGATCAGGAAACATTGTGGAGTGGTGCTTACCTCAGGACATAAACCTGGAAGGTGTGGAGTTCAAGTCAATGGCCAGCGGTTCTCATCGAATTGCAAATGATTTCATATATTTTCGCAAAGGATCTTTCTTTGGGCTGGCATGCTTCGCCAATATGCCGGTGGAGAGTGAGCTAGAGAGGGGGGCTCGAATGAAGTCTGTAGGCATCCTGTCACCGTCATACACACTGCTCTACCGCTACATGCACTTTCTAGAGAACCAGGTCAAGCACCAGCTGCAGTATCCGGGCCAGTACTCACCACTGGAGGCTTTTTACGAGGATAAGAAGGCTGTGCTTCCCCCGGGGGGGAACGGTCTGGTCACGGTCTGCCCCACTAGCACCATGGTGAACCGCTGCATGCATCCAGAGATGAAGATTACACATCCTGCTGGCTGCATGTCTCAGTTCATCCGTTTCTTTGGAGAGCAGATCATGGTGTTGTGGAAGTTTGCCTTGTTAAGGAAGCGCATCCTCATCTTTTCTCCTCCACCTGTCGGCGTGGTCTGTTACCGGGTATACTGCTGTTGCTGCCTTGCTAATGTGTCCATACCTGGGATTGGTGGCTCTGTACCAGAGCTCCGCCCCTTCTTCTATATCAATGTCGCTGACATCACAGCTCTGGAGACGGAATTGTCCTACGTGGCTTgCACTACAGAGAAgatttttgaggaaaagaaagagctTTATGATGTCTACATTGACAACCAGAATGtgaagacacacagagaaagccTGCAGCCTCTGTTGCGAATTAACAATGCCGACAGGGAGAAGTATCGCAAACTCAGTGAACAGAGGCAGTTGTTGCTGTATTCCCAGGAGGTTGATGGAGACTGCACCTCTAGTGAGGAAGACCTCTTTATTCTGTTCTTCATGGAGCAGAACAACCGCATCTTTCAAACCCTGCTGGAGGTCGCAGGGAGCGCTGATCCCACCCTGACTCCCGAGCATGTGCGTGCTATGGGCTTGGACCCGCAGGCTGACCGCGGCTTCCTTGTGGATCTGCTGGAGGTCTACGGCATCGATGTCATGCTGGTTATCGACAATCCATGCTGCCCGTAAGGCTAGagaggtttctctctctctttctcccttcaTCTATGTCTCACTAATCACTAATGCTCTCTCTGGATCCGCTAGCCTTGCTAGGCTGGAACACACTGCCTGACTCCCTGCTTTcctctctttgtctttgtctttttcttggCCCGGGTGTCTCAGGAGCCAGTACTGACCCCTGGCCTCACCGCTGGAGTGAAATGATACTGCCTCTTCAGGCTTTGATACACTGCTGCCTTCACGCCCCTGACGTCTGTCTGCTTATGtatgtttgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttttttctctcagtatcTTGACAGCTACCTGTGGGTTTCTTTCCCAACTGCGCCTACGTCCTGAAAAGTGACAAAACTGATCTCTGTGCCTCTTTATTACTGCTTGTTTTGTGGACCTCAATTGTGACTCTTTTCTTCTAGCCAGTGCTGTTTTGGAGGCCTGATGTAAGGCCCTGTCTGGGTCTCCAGTGTGCTTCATCTGAGCCCCACAGACTTAAAGTAAAGCAATGGAAACACTTTCATCCTTGTGTCGGACTGGTATTTTGTCTGATGAAGGAAGGTAACTGAAAGGCAATGATCCACTACGTTGTTCCATATTAACGGTTTTTGCAGATGTACGGTATAATGCACCTGACTGGAACTGTTTTATTGGACCACATTTCCATAATTTCCTGCACTATTTATTAAGCTTACTCAACAtaaattcagtttttattttctaaaaacaaaatggacatCAGTTTGACCATTTTggtgtctctccctctctctctctctctctctctctctctctctctcctccctctccacTGATGCTTTTTGGATTTTGTCAGCCCTTATGCCTGTACCTAATGACTGGATGAGTGTCGATGACAAAAGgaacaatttaaatattttgaagAGTGCTAATAAATCCTTTAAGAATTCATCGGTTAAATATTCTGGTCTCCAGAGTGATGACGGGTCTGGAATGTAAATTCATGATGAAAGACACAAGCGTCTCAACTGCTGTATGTTCACCTTCAATCATGCTCATGGACCACATTGGATTTGCTGCAAATTCTGTTGATCCTGAATCACTGTATTTTCTAGAGCAGGGCTGGACAACCTGTAGCCTCAGAAGATGGCTGGATATATGTGCCAGGATTAGATCAGTTTTCACAGTGGCATCAGTTTTGGCcaagtaaattaattaaaattaatggaATTTACATGTTGTGTTTTGGCTCTTGGCTTAAATGATGCACTGTATTTTGACACACCAGGTGTCCCCTGCTCTAGAGTAAAAAGACCAGTCTCTTATTTGGACTGCCTTTAATATGACTATAATAATTCTACTGTATTATAATATGGATACAGTAGGTGTGAATGCTAatgacacagacacagacaggggtatatatatatatatatatatatgtatgtatttgtgctGAATTTAACACATTCCTTACGTTAGGTATTGGTTGCAAGTTGTATATTTTTTCTGCACCATATGAAGCTCAGTTGTAATACAATGACACATTTTGATCCAGTTATTGTGATgcttttgaatgtttttttttttttttcccacacagaaaaatatgaatgtgattcTATCAGTGAATGCTGTATTGTTTAATGACTTCTGTAGACTTCGTTTTATGTGTAAGCTtggatttgtgtttaaaatgtatttgcaaTGATTTGACTCAATTAGTTTTTATCAGAACTAGATCATATGGCCATACTGGCAAAGTCAGCTGCTACTCCCTAAAAGAATTTATTCATACAGCACCAGTTAATAGATTACATTTAGATCGCACTACATTAGTTGTAATCCATGGCTTGTACATAGGTGATAAGTTTGCCCCTATTTATCACCAAACATTGTCTATGTCTGTAAGGGTGAGAAACTCAGTAACAAACAGTCTATTGTGTTGTTTAGGGCCTGTGGAACTTTGCAGGCAATAAACCCTACTGTCTTCGATCCAGCAGTCCAGATTTGTGTTCAATCTACATACCAAACTCTTATTTGAAAGGTTGACTGCAAAGAGTAATCATGTCTTCTTTCTGTGAATGAGTGCAGGCACTCGTTGATTGATACATATTTGGGATACAAATATGCTTTTACTATTGATGGTAAAATCTACCGAGTTTAAATTAACAATATATAATCTCTTAGACATGTTATATAGCGGTAATATGGCGGAATCGCTGATGTGAATTTTTTGATATATCTCATGTACTACCTATTCTTTACctcttaaataatattttattaacagcAGCGTTAATGTGATCTTGAtgagaaaatatacagtaatgaCTGCATATGAATCAACTGTGTATGAATGCTTAAACAAATAGGTGTTGACTAAgcattaaaatgtcattaaggCATACACAGTGGAGAAATGTTCAGCTCCATTTAGCCGACGTCTGTACTCGTTTAACATTTTTTCCATCATGCTACCGACTGTaactgcatgtgttttttttttttttttggtctaaaCCCAGTGGTTCTTTTTACTGCCATCTTGAAATAAACTCTCTTTGCTGATGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117878 lncRNA downstream 1802 14328927 ~ 14334134 (-) True G99408
TU117611 lncRNA downstream 300395 14035267 ~ 14035541 (-) True G99202
TU117596 lncRNA downstream 385215 13950147 ~ 13950721 (-) True G99187
TU117597 lncRNA downstream 389025 13944751 ~ 13946911 (-) True G99188
TU117593 lncRNA downstream 403002 13932553 ~ 13932934 (-) True G99184
TU117867 lncRNA upstream 2710 14349718 ~ 14355619 (-) True G99401
TU117912 lncRNA upstream 101848 14448856 ~ 14453107 (-) True G99433
XR_003403487.2 lncRNA upstream 163916 14510924 ~ 14519784 (-) True LOC113534271
TU117933 lncRNA upstream 186812 14533820 ~ 14536010 (-) True G99453
TU117962 lncRNA upstream 254215 14601223 ~ 14603472 (-) True G99482
XM_026927815.2 mRNA downstream 11498 14315835 ~ 14324438 (-) True ighmbp2
XM_034305403.1 mRNA downstream 41496 14289025 ~ 14294440 (-) True LOC113534338
XM_026927471.2 mRNA downstream 59285 14266084 ~ 14276651 (-) False paqr5a
XM_026927358.2 mRNA upstream 19799 14366807 ~ 14384784 (-) True bcl2l13
XM_026927359.2 mRNA upstream 19799 14366807 ~ 14384484 (-) False bcl2l13
XM_034305263.1 mRNA upstream 19799 14366807 ~ 14384310 (-) False bcl2l13
XM_034305027.1 mRNA upstream 42891 14389899 ~ 14398268 (-) False wnt2
XM_026927008.2 mRNA upstream 42891 14389899 ~ 14398268 (-) True wnt2
XR_003403533.2 other downstream 547089 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 547737 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 548150 13787657 ~ 13787786 (-) True LOC113534844
XR_003403542.1 other downstream 548734 13787134 ~ 13787202 (-) True LOC113534850
XR_003403543.1 other downstream 549088 13786778 ~ 13786848 (-) True LOC113534851
TU118530 other upstream 1000158 15347166 ~ 15354637 (-) True tmem170a
XR_004578368.1 other upstream 3739647 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 3840439 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 5003754 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 5633061 19980069 ~ 19980259 (-) True LOC113527007

Expression Profile