RNA id: XM_026927790.2


Basic Information

Item Value
RNA id XM_026927790.2
length 3629
RNA type mRNA
GC content 0.45
exon number 23
gene id mctp2a
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15812514 ~ 15856112 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCAACAAACCGGTCAAATGAGCCAGACAGCTTCAGAGGTTCTGAGTGTTTAAGAGTTTGTCGGATTCATGCTTTGCACAAGTCTGCAGTACATTTTTAACTGCCTATAGccATCAAAGAAATAATTGATCTCATCTCCAGTCAAAATGGACCCCAAGAAGAATAAAGTCTTATCCAAACTGCGAGATAAAACCAAGCCCCTGTTTAATGTGAAGATAGGGAAGAAAGTAAAGAAGACTCCCCTGCAATACAGGAGGAGCATTTCAGTACCAGACCTGTCAAGTGATCAATCCATGCCATCTTTTCTATACCCTACTGCTCAATCTTCAATCCCAGACTCGTTTGTTGAGCCAGCTCATTCACTTGCTCCTTATGAAACAAAGTGTGAAACCTCCAGCCTAACCGACAGTCTCACTGTCACAGATGCAGCATTATCTGCTAAGTGCACTGATCCATACACTGTTCCAGCCTCCCCACTTTCAAAAAGGGTCCTGGGCCAGCACATAATACTACAGACGCATCTCTGGATCAAGTTATTACCCCAAATACACCGTCCTCAGCCAGGTCCCTGGACCAATTTACTGCCCCATACACACCATCTTCAGCCAAGGCTCTGGACAACTTGATGCTTCCAAACACACCACCTACAATTATTTGTTCAGCATCAGACAGGCCAGCATTTATCAATATACCAGCCACGAAGGATAAaccagagagggaaagaaacacCACATGGTACATAGAGGACAGCGAGTCAGCTTGTAGCACACCATCTGAGGACCGCTCCTACATCTTCTGCCCTCCTGACCATGACCTGACAGGGTTAGAGCCTGCTACACCACGGTCCACAGAGATGTTTATTATCGGATCAGCTGAGGACAACAATGAAGTTTCCAATGAGACCAATGACTATGACACCAATTTCTCAGGAACAGAAACGAGAAGCTCAGGAGTGTGCAGTGAAGCCCAGGCTGTTCCAGCAGGTCAGAAGCTCCATTATCTCCTCACCATCAACTTGAGGGAAGGACGGAACCTGGCCATCAAAGACCGCTCTGGTACCAGTGACCCGTATGTCAAATTCAAAATAGATGGCAAGACAGTCTACAAAAGCAAGGTTGTGTACAAGAACCTTAATCCTACATGGAACGAGTGTTTCTCCATCCTCATCAGGGACCTGGAACAGACTGTCTATGTTAAGGTGTACGACCGGGATCTGAGATCTCGGGACTTCATGGGTTCAAGCGCCATCACTCTCAGTAACTTGGAGTTGGACAAAACATCTGAGATGATCCTGCGTTTGAAAGACCTTGGCAGTCTGGAAGAGGACATGGGAGTAATAATCTTAGACGCCTGTGTGTCCATCTGTGAGGGGCCCACCAAACGAAATAAATGGCCACTTAGGAGGAAAGGAAGCTTCAATAAGGGACAGCTCCGAGCGGCTGCCATGCAGAAAAGCCAAGTGTGGAGTGGAGTATACACTGTGGTGCTTGTGGAGGGGCAGGACATGCCTGAAAGCGGCCAAGGGGATGTCTTTGTCCGCTTCAAAATGGGGGAACAGAGGTTCCGAAGTAAGTATCTGTGCATTAAGACCAATCCACAGTGGAGGGAGAAGTTCGAATTCAACCGTTTCGAGGATGGCCAACCAGATGTGCTGCTGGTCGAGCTCTACTGCAAGAAGGGCAGAAAGTGTGTGGAATGCTGGGGAGGGATTGAACTTGACCTCTCACAGCTGCCAGCCAATACAAAACAGACATACAACGTGATTACAGGCAAAGGTCGACTGGTGTTTCTGGTCACACACAACCCCTGTCCTGGAGTTTCCATCTCTGACCTGGGCTCCACATCCTTAGACAATCCATACACCTATGAAAACACCCTGAAGAAATATTGTCTGCAGAAGACGCTGGATAATCTACGGGATGTCGGCTATCTCCAGGTCAAGGTTTTACGGGCTGCAGACCTTTCAGCTACAGATCTGAATGGTAAGAGTGACCCATTTTGTGTGTTGGAACTTGGGAACAGCAAGCTGCAAAGTCAAACCATCTATAAGACCCTCAATCCAGAATGGAGAACAGCCTTTACATTGCCAATTAAGGACATCCATGATGTCCTAATCCTGACTGTTTTTGGTGAAGATGGAGACAAAGCACCAGACTTTCTGGGGAAAGTTGCTATTCCTTTGCTTACTGTCTCTAATGGACAACAAATAACCAGTCCTTTGAAAAAGGACAATTTGGAAGATATGTCGAAAGGAAGCATTACACTGGAGATGAATGTTTTTTACAACCCAGTCAGAGCTGCCATTCGAACCTTCCGTCCCAAAGAAACAAAGTTTGAGGACAACCCAAAGTTCAACAAAAAGCTGTTAGCACGCCACATTTCCCGTGTGAGGAGGATCAGCATGGCCATTCTGTATACGTTGCAGTACATTAAGAGCTGCTTCCAGTGGGAGAGCACTCAGAGGAGCATCATTGCCTTCCTGGTCTTTGTATTGACAGTGTGGCACTTTGAGCTGTTCATGTTGCCTCTCTTCCTCCTGCTGCTTATCGGCTGGAACTATTTCCACATCACGCCAGGCGTGGGCAGCCACAGTCAGGACCTGGAGAGCATCTCTGCTGCAGAGGacgaagatgaagatgaaaagGAATCAGAGAAAAGAGGCCTGATAGAGAAAATCCATATGGTTCATGAAATTGTGCTCACCGTCCAATGTGTTCTCGATGAAATAGCATCCATCGGAGAAAGAGTAAAGAACACTTTCAACTGGTCAGTGCCGTTCTTGTCCCTCCTGGCCTGCTTTGTCATGTTCATTGCTACAGTTGCACTCTACTACATCCCTTTGCGCTACATTGTCTTGTTATGGGgtGTTAACAAATTTTCAAAGAAGCTCCGCAACCCGCATGTCATTGAAAACAACGAGCTACTGGATTTTCTCAGCAGAGTTCCATCTGATGTTCAAAAAGTGCAGTATAGCGAGCTGAGAGCGCCTGGCATCCAGAGTGCACAGAAGAAGAAGCGCTAGTGCTCATGCGAGTTGTTCTGGATGAAAGGGCGAGACAGTGGTTGAAAGTGGGCCCCTCCCTTCCTGTAGAATCAGGTGGAGCCCCCACCCATCAGACTTATCTCCTGTGGGGAggctatgagtgtgtgtgtgtgtgtgtgtgtgtatgtgtgatagaACATTATGTCACTCAGTGATTTGCAGACCAGCACGTTGGGATGTAATTAACAGAGCATGATCATGATAAAGAATGTAAAAGCAAAGTATCCCCAGCCGTGCAGCGATAATGCAAAACACAACAagcaattaataaattaattaatacaacaATACTATAAATTAATAAGTGACACAAAATGTCCTGGTGGTATGTAAATAATTTGAGGGTGACATGTTTTGTTTATCATTAAAAGGAGATGAGGCATTAATGCATTACAGGCATGATAAAGTATCTCCTCATTTAGACCGTATACAGCAaacaatattaatgaaaaatgcaATCAGAAATTGTGATGCAaacagttatatttattaaatggaAGAATGCAAATATGGCCTTttgtaaaatgttcaaattaatGTGTATGGATTACATGATTTGTATTGATATTTTTCAtcctatatattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118660 lncRNA upstream 78166 15671329 ~ 15734348 (+) True G100079
XR_004578360.1 lncRNA upstream 203411 15607970 ~ 15609103 (+) True LOC117597598
TU118450 lncRNA upstream 289790 15522020 ~ 15522724 (+) True G99893
TU118406 lncRNA upstream 344298 15467938 ~ 15468216 (+) True G99854
TU118435 lncRNA upstream 357475 15450819 ~ 15455039 (+) True G99879
TU118682 lncRNA downstream 3147 15859259 ~ 15859474 (+) True G100097
TU118687 lncRNA downstream 7179 15863291 ~ 15863493 (+) True G100102
TU118688 lncRNA downstream 7578 15863690 ~ 15863915 (+) True G100103
TU118749 lncRNA downstream 12435 15868547 ~ 15868764 (+) True G100160
TU118750 lncRNA downstream 13844 15869956 ~ 15870159 (+) True G100161
XM_034305539.1 mRNA upstream 3398 15723423 ~ 15809116 (+) False mef2aa
XM_034305541.1 mRNA upstream 3398 15723423 ~ 15809116 (+) False mef2aa
XM_034305538.1 mRNA upstream 3398 15723423 ~ 15809116 (+) True mef2aa
XM_034305540.1 mRNA upstream 3398 15723423 ~ 15809116 (+) False mef2aa
XM_034305453.1 mRNA upstream 140180 15660992 ~ 15672334 (+) True fan1
XM_034305369.1 mRNA downstream 403333 16259445 ~ 16260173 (+) True LOC113534692
XM_034305372.1 mRNA downstream 644648 16500760 ~ 16510979 (+) True LOC113534621
XM_026927763.2 mRNA downstream 801489 16657601 ~ 16680535 (+) True rgma
XM_026927242.2 mRNA downstream 908583 16764695 ~ 16816272 (+) True slco3a1
XM_026927243.2 mRNA downstream 908583 16764695 ~ 16814449 (+) False slco3a1
XR_004578337.1 other upstream 466546 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 1288034 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 1771732 14035230 ~ 14040782 (+) False skor1b
TU117337 other upstream 2023124 13785095 ~ 13789390 (+) False G98972
TU117309 other upstream 2096748 13691607 ~ 13715766 (+) True G98946
TU118902 other downstream 493345 16349457 ~ 16349787 (+) True G100306
TU118951 other downstream 744145 16600257 ~ 16601067 (+) True G100345
XR_004578324.1 other downstream 1544314 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 1633434 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 2691813 18547925 ~ 18548289 (+) True LOC117597608

Expression Profile