RNA id: XM_026935369.2


Basic Information

Item Value
RNA id XM_026935369.2
length 5059
RNA type mRNA
GC content 0.43
exon number 21
gene id blm
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17041357 ~ 17065819 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGACTGCATAACAGCACAGTAGGTGGCGATATGCACACAGGATACAACGCgccaaaaaaaacagaagaagaagaagaaaatctaGCCGGGAACGTGAATAACCACGCTTACAGTTTAGACTGTTTTGTAATGAGTGCTTTACATATACATTCTGTTAGACTTTTCTGTATAGAATATTACATTAGTGGTCGCGAGTGATTCTTATGTTTGCAGCAGTGGAAAAAGGTTTTATCGGTAGCCTGTTACGTAGCCTGCTAGCAAACACTAATGCAAAAACTGGCATTtggattagctagctagctagctagccagccaGTTGTGAGCTTCTGCAAATGCCAAGTTTAGTATAATATAATTGTCTGCAtctcttctttatttaattCGTATTTTCTGTTATATAGTTGCCGTGTTACCCCATTCTTTTTTTACACGCACGTTTACTCGCTGCCCGCGCGATGCCTACACTTCCTCATAACAATTTAAAAGAGCAGCTCGAGCGGCACAGCAGCGCAGCCGCGCGAAGCAAGTCTCTGGCCAGATCAAAGCCTGGgacattttgctttaaaaagaaGTGTACACCAGGCAGTGCCAAAGCTGAAGTGCCTCAAAAGCTTCCAGGCAAAGCCAAGACACAGACATTCAACCCAGTAGTCAACCCATTTGCAGTGAGCAAACCTAGCCTTGTTGAGCTTTCCATCAGCAGATTGCATaaaccacaaaaaaacagactcaCAGGCACCAATGGAGGCAAAGCTGTAGGATTAGCTGAGGATTACATCTCGTCTGCTATTCCCTTGGACGACTGGGACCACTTTGATGATTTTGAAACTCCAGTCAAGGGAGAAAGAGCAGGACCAGACAAAGACCTATCACCTAAAGGTGCTAGAGCTCAGACTTGCAGCACTGAGAATAGGGATTTGCCAATAGTGGGATCTTTTGGCATGTCAGACAAAGCTTGCtttgtttcaaaaaaaattcttgCTGTTGATCAGGGTGGTGCCCAGTCAGGACATACTGATGGTGAATCCCCCATCAatacaacaaaacatttaatttcagttaaacACAAGTCTCTGCTAAGTGACTGTGAAGACAAGAGCATTGCCACTGGCATTAAGGCTACTGATAAAATTGTGGGGGATTTCAACTGTTCAACAGCAGGCAATTTGAAGTCACCATCGGGGTTTGATGATACTCTCTTCAGTGTTATGGAGTCTATTTGTTGTCTAGTGGACACAATCCCTGAACATGAGCTTATATCCCTTACTTGTGGCACAGAATTGCTTTTACTGAGAGCTCACAGGAAAAGGATTGTAGCTGATGCTGCATTGTTGGAAAATCAGCAGTCAGACAGAGGAACCAACACTCACCCTAGGTTGCTTCACAAAGCTACTTCTGCTGTCACAAGCAAAGGCGATCGTTCATCTACACACTTTCAGTTCAATAAATCCAATGCTTCTGTTATATCTCTGGATTGCAACAATAGTATCTTTAAAGATTCAGACTGCATTATCAATGATGTGGTTAAAGGAGATGCCTGCAGCCTGAATCCTTCCCTTATACAGGCTGATAATCAACACAAGGGAAAAATCTCAGGCCTGAACAATGGTAATGTAAACATTCAACCTGGAGAATGTTCTTTGAGTCTGTCCTTCCATCAGTCAAATGGTCAGACTGTGGCTCAAGAGAAAATGGTACATTTCACCTCTCCTAAGAATACAATGGAGGTGGACAGAAAGAATGTGGACAGCAACGCATTAGTTGGAGGGGCTGGTTTACAAGACCACAAAGAATCAGATGACATAGGTGACTTCTGCATAAGTGACTTTGACATTGATGACTTCAGTGAGAATGATATCCCAGATTATTGTGAAGAACCTGCAGCTTTCTCTGTGACAGGGAGTTCCAGTGCCCTACCACAGCCATTTTGTGAAGGAGGACTCTCGAACTcctatgAGGTTGCATCCAGAAATCTAGCACATGATCGCTTCTGGGGCTTCAACTTTCCCCACTCTCCAGAGATGATGAAGATTTTCCACAAGAAGTTTGGTCTTCATCAGTTCAGATTCAATCAGCTAGAAGCCATCAATGCTACTCTGCTGGGAGAGGACACATTTGTGCTAATGCCTACAGGAGGGGGTAAAAGCCTTTGCTATCAGCTGCCTGCTTGTGTCTCCGCTGGAGTGACTGTGGTGATATCTCCACTTCGTTCCCTTATTGTGGATCAGGTCCAGAAGCTTACAGCTTTAGATgtCCCTGCCACTAGCttgtctggggaaaaaagtgactATGAGGCTGGACGAATCTACATGCAGCTTTCTAAGAACGATCCAGTCATCAAACTGCTTTATGCCACTCCTGAAAAGATCTGTGCAAGTGGGAGGATGATCAGTGCTCTGCAGAATCTGTATGAACGAGGTCTGCTTGCTCGTTTTGTCATCGATGAGGCACACTGTGTCAGCCAGTGGGGACATGACTTCAGGCCAGACTATAAGCGGATGCATGAACTGCGCCAGAAGTTTCCCAAAGTTCCTATCATGGCACTGACAGCCACAGCCACACCTCGGGTCCAGAAGGACATCCTTAACCAGTTGGCTATGACTCGACCACAAGTATTCTCAATGAGCTTCAACAGGCACAATCTCATATATTCTGTATTACCTAAAAAGCCCAAGAAAGTCGGAGAGGACTGTATTAACTGGATCAAGAAACACTATCCATACGACTCAGGAATTGTATACTGCCTGTCACGGAATGACTGTGACAGCATGGCAGATAGTCTTCAGAGGGCAGGTATTGCAGCCCTAGCATACCACGCTGGGATAAATGACAGTGACCGAGAGTATGTCCAAAACAAGTGGATCAACCAGGATGGTTGTCAAGTCATATGTGCCACCATTGCATTTGGCATGGGCATTGACAAGCCTGATGTACGTTATGTGATCCATGCCAGCCTACCCAAGTCAGTGGAGGGCTACTACCAAGAATCAGGCAGAGCTGGCCGGGATGGAGAGATCTCCCACTGCATTCTCTTCTATTCTTACACAGATGTCATTCGCATCAAAAGACTAATAGCCTTAGACAAAGAAGGCAACCACCAATCCAAAGCCACTCACATAAACAACCTGCACAGCATGGTACATTACTGTGAAAATGTGACAGAGTGTAGGAGGATTCAGCTTCTTGCATATTTCGGAgaacacaaatttaatacaGAATTCTGCAGGCAGTATCCAGAGGTCATCTGTGACAACTGTGCCCGACCACACCAATACAATGCAAGAAATGTGACTGAGGATGTGAAGAAGATTGTACGATTCATACAGGAAAACTGTGAGAAGGTCGGTGGCAAATGTCCCagatttttgcagcaaaacagACTCACTCTGAACATGCTGGTTGACATTTTTCTGGGCTCGAAAAGTGCCCGAATCAAGTCAGGCATGTATGGGATTGGAGCAGCGTACTCCAAACACAATGCAGAAAGGCTCTTTAAGAAACTAGTGCTGGACCACATTCTCGTGGAGGATCTGTATATTACTAATAATGGACAAGCTGTGGCCTACATATCAGCTGGCCTTAAAGCCATGGACGTCATCAATGGCATCATACAGGTGAATTTCCATGAGACTGAGAGTGCCTCTAGCATTAGAAAGCACAAAGCCACTGTGACCAAGAGTGTCTCTAAGAGGGAGGAAATGGTGAAGAGGTGTCTGGAAGAGCTTAATGAGCTGTGTAAAAAGCTTGGCAAAGTGTTTGGTCTTCATTACTACAACATCTTCTCCACAGCCACTTTGAAAAAGATTGCTGAAACACTGTCTACTGACCCTGAGGTGTTGCTGCAGATTGATGGCGTGACTGAGGACAAACTGGAGAAGTATGGAGCTGAGCTCATTGAGCTACTGGAGAAATATTCAAAATGGCAGCTGTCAGTTGAGGAGCAGGCTGAGGGCTCTCATTCTACTGATGATTATTATGACAGAGATGGCAGCATGTCTGCCTACTTCAGGAGCAGCAAAGGtcaaggagaaaagagaaagaaaccacCCTTATCAAAGAACTCCAAAAGACGCAGGGGTTACAACAACCAGAACTTCTCTAAACGTGGAAACCAGTCTTCATCTAAAGGAAGACACATAGGTGCAGATCGAGTTTCTAAACATGCTCCttcagcaccagcaaggaggaAACCTGGCTTCATGGCTCTGCCCATTCCTCAGCGTGCTGAGCGGCCATTCCTCAAACCTGCCTTCTCTCAACTTGGCTGAGTCCACAAgcactgcttttttctctttgagCTAAAcctgtgtatatttttgtaaagtatATATATTCTGCTTTTTTGCCTGTATTTCTTGTATATTTTAAGCccatattttgtattattttgtgttgAACTGTCTAGTTTAAGGAAACAAcggatttttatttgtttttatattacttttagAATTAAAGTAATTCAGCATATACCCTGACATAAATGACTATCAAATTTAGAAATAGCTTTAATTTTGCAACTTTGATGCAACGATCAGTTCTAAGTTCTATGTTCAGTATAGTTTGCAAtagatttttacaaaaaaataaaataaaataggtattgcttaagtattcacccctgttAATATAAACACCAAAAATTCATTCTATGCAGTCAGTGACCAACAAAATTCACATACTTGGCTGAATGCAGTCCACCTCTATGAAATAAGTGTCACaagcttctctgactaatgctcTCCTTACTCGCTCACTGATTTTTGATGGGCAACCTCCTCTAACCATGCTTGTGGTTATGCTatattctttctattttttaataatggatttaatgatgctctgccagatgttcaaagtttgggatttttttttagtaaccaaaccctgatttatacttttccattttttttcatagacttgttttgatagtgccttggtcttcatgatgttTGTTTAGGTACACTCACCATCTAGTTTATTGAGAACACCtgcatgcagttatctaatcagccaatcatgtggcagcagcacaatgcaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K10901 BLM, RECQL3, SGS1; bloom syndrome protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578316.1 lncRNA upstream 2081 17038051 ~ 17039276 (+) True LOC117597540
TU119131 lncRNA upstream 17129 17010715 ~ 17024228 (+) True G100499
TU119104 lncRNA upstream 69119 16971830 ~ 16972238 (+) True G100480
TU118986 lncRNA upstream 101629 16938735 ~ 16939728 (+) True G100379
TU118977 lncRNA upstream 218255 16822368 ~ 16823102 (+) True G100370
TU119127 lncRNA downstream 22135 17087954 ~ 17090706 (+) True G100495
TU119167 lncRNA downstream 85134 17150953 ~ 17152232 (+) True G100532
TU119168 lncRNA downstream 88887 17154706 ~ 17154971 (+) True G100533
TU119180 lncRNA downstream 110339 17176158 ~ 17176370 (+) True G100544
TU119380 lncRNA downstream 424327 17490146 ~ 17493002 (+) False LOC113539654
XM_026935710.2 mRNA upstream 57381 16978935 ~ 16983976 (+) True ppp1r15b
XM_034305391.1 mRNA upstream 112715 16838875 ~ 16928642 (+) True srpra
XM_034305393.1 mRNA upstream 112715 16838876 ~ 16928642 (+) False srpra
XM_034305394.1 mRNA upstream 112715 16838876 ~ 16928642 (+) False srpra
XM_034305392.1 mRNA upstream 112715 16839669 ~ 16928642 (+) False srpra
XM_026935421.2 mRNA downstream 297306 17363125 ~ 17378340 (+) False slc28a1
XM_026935420.2 mRNA downstream 297369 17363188 ~ 17378340 (+) True slc28a1
XM_034305185.1 mRNA downstream 334607 17400426 ~ 17443468 (+) False LOC117597546
XM_034305187.1 mRNA downstream 334607 17400426 ~ 17443468 (+) False LOC117597546
XM_034305184.1 mRNA downstream 334607 17400426 ~ 17403388 (+) True LOC117597546
TU118951 other upstream 440290 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 691570 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 1695389 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2516877 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 3000575 14035230 ~ 14040782 (+) False skor1b
XR_004578324.1 other downstream 334607 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 423727 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 1482106 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1485627 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1532895 18598714 ~ 18599375 (+) True G101419

Expression Profile