RNA id: XM_026935420.2


Basic Information

Item Value
RNA id XM_026935420.2
length 2918
RNA type mRNA
GC content 0.40
exon number 17
gene id slc28a1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17363125 ~ 17378340 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAGGCTTTCTTGCTTTAGAAAGGGAATAAACAATAAGAATTATTTCCCTGAATGTTAAGAAATTGCAGTTGTACTTTATTATGctgttattacattttattattggATGTTATGGTTAAGAGATTTTAAATTCAAACTTTCTCCTGCAGTGAATACTGATCACATAGAgttgaaaaatgtcattcaaAGTAATGGACATGGAGTGGACAATCCGGGATTTGAGGCCGAGGAGGAAACAATATCAGATCACAACAGTGAGATGGCACAGAAAGAATCAGGAAAAGAGTCCAAATCATCTATAAGCAAAATATTCAAACCAATCATGGCTACTGAAAACTTCTTGAAGGCTCACTCTCGAATCTTCAAATACATTGCCCTGGGGATACTTAGTGCAGGCTATGTGGCATACTTTGTTGCTGCCTGCTGGTTGAACTTCCAGAAAGCAATTGCTCTTGTTGTCCTTACCAGTGTAGCGGTGTTTTTCACATTGTATGATTTTGTGAAGAGGTCCAAGGGAGACACTATAAAACACTTCTTAAAGCCTGCTGTTAGATGCTTTAAAGCCAACATGAGGTGGATAAAATGGGTTTTTACATTAGTGGTGGTAGGACTGTTGGTGGCCTGGCTGGCAGTTGACACAAGGCAAAACCCTGAGCAGCTCATTTCATTTGGtggtgtctgtctctttatcctTGGCTTGTTCCTCTTCTCTGCAAAAAGATATGCAGTTCGTTGGAGGACAGTCCTCTGGGGGCTTGGTTTACAATTTGTCATGGGCCTGTTTGTCATAAGGACTGAGCCTGGTTTCATAGCTTTCAACTGGCTGGGAGCACAAATCCAGacatttttaaacTACACCCATGCTGGCTCATCTTTCGTGTTTGGCAGTCTGGTAGAATCAGGCATCTTTGCATTTCAGGCTTTGCCTATAGTGATATTTTTCAGCAGTATTATGTCAGTACTCTACTACCTTGGTGTGATGCAATGGATTATCATTAAGATTTCCTGGATTATGCAGATAACAATGGGAACATCTCCTACGGAATCGCTGAGTGTTGCAGGGAATATATTTGTTGGACAGACAGAAGCACCACTGCTGATTCGTCCCTATTTAAAAGACATGACCAAGTCTGAGATCCATGCTGTCATTGTTGGAGGTTTTGCCACAATCGCAGGCAGTGTGATGGgagctttcatttcatttgggATAGATGCATCCTCTTTGATTGCTGCCTCTGTAATGGCTGCTCCATGTGCATTGGCCATGTCCAAACTCTCATATCCTGAAACAGAAGAGAGCAAGTTTAAATCTGAAGACAATATCAAAGTAGAAGGCGGTGGTGAACAGAATATCCTGGAGGCTGCTTCTGCTGGAGCAGCTGCATCTGTCGGGCTTGTGGCTAACATAGCTGCCAACTTGATTGGATTTCTTGCCATTTTGGCTTTCATCAATGCAGCTCTGAGCTGGCTGGGAGGAATGGTGGGATATCCAGACATCACATTTGAGCTCATCTGCTCATATGTATTCATGCCTGTGGCCTTCATGATGGGCATACCATTTGATGAGTGCTTCATTGTGGCTGAACTTATTGGCACAAAACTGTTCCTCAATGAGTTCATAGCTTATGAGAAGCTGTCAAACCTGAAAAATAATCGATTAAATGGCATCACAGAAGTgggaaaatacatttcaGTCAGATCAGAAATCATCAGCACCTATGCTCTGTGTGGCTTTGCCAACTTCAGTTCACTTGGAATTGTGATTGGAGGCATGTCTTCCATTTGTCCTTCAAGAAAAAGTGACATTTCTGCTTTGGTGCTAAGAGCCTTGTTCACAGGCACTTGTGTGTCCCTGCTTAATGCGTCTATTGCTGgccttctttttcttcctcaacTAGATTGTAtagatgtgtttaaaaattcTGTCTTCAACACCACTGATACTAAAATCCAAACTTGCTGTTATGGCCTCTTTGAAAGTGCTGTGAAGAATGAAACAGTGATTTCTTTCGAGGGATCTTGGAGCATGGTGAAAAATGCCACTCTTTATTTCACAGAGTGCTGCCATCTTTATAATGAAACTGTCTGCATTTAGGAATTCTGCATTGTTTTTGCGTAGCACATTGTATTTGTAAGTTAATTCTTTATCATTTTCTCTTATATGTAGATATAAAACAACATATATTTTGGCTGTATCATAATAGTTAAAGTGTTGTTTGTATTGGagtattgtttaaataaaaagttatttaatcAGTAAGCTTTATAATAAAGTATTAGGGCTGCCACTGAactcaaacaaaattatttttatgttggctataaacattttgattttCTCAAAATGGCATAGCCATTGCATAGCCAGCCATGGAATAACCATAACTATTGGATAGGAGGGATTGGAGGGAGACCATAACTAGTGGTTAAGAGGGATGATGTTCTCTTAATTgccaatcagagcaacactatccaattgtgggcatctgtgagcacacatatgtatgtggaagaggccAAGTTTCCTCCAAGTAGAAATGCACAATggaccacctttttttttttgcttattcaATGCCACTTCTGTTCACTCTCAAATAATTctgatatttatatatcagATAATAATGAACACTTCTAGCATTTTGTGTGTTCAACTGTCCTGTAATGTAGCATAAGCAGCAGATTGAAAAGATTCTGTGGTTGGTTTCACACGTCTCGTAGGATGCAAATGTTAGCCTTTACCACCCTCCCCATGTGGTAGCTGTGGGAAAACCAGATTGGGCAAATGACCAGTTTGAGAGAAAGTGGTGTAAAAAAAACGGGGGGTTGGGGGGCTTATCTGATTATGTGTCAGGCTCAGTAGACTGAAgttagatttaaaaatgttaataaagttACTgttaaactataaaa

Function

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005415 nucleoside molecular_function
GO:0001882 nucleoside binding molecular_function

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119180 lncRNA upstream 186818 17176158 ~ 17176370 (+) True G100544
TU119168 lncRNA upstream 208217 17154706 ~ 17154971 (+) True G100533
TU119167 lncRNA upstream 210956 17150953 ~ 17152232 (+) True G100532
TU119127 lncRNA upstream 272482 17087954 ~ 17090706 (+) True G100495
XR_004578316.1 lncRNA upstream 323912 17038051 ~ 17039276 (+) True LOC117597540
TU119380 lncRNA downstream 111806 17490146 ~ 17493002 (+) False LOC113539654
TU119517 lncRNA downstream 612062 17990402 ~ 18068569 (+) True G100846
TU119860 lncRNA downstream 826752 18205092 ~ 18205814 (+) True G101183
XR_004578365.1 lncRNA downstream 883383 18261723 ~ 18277820 (+) True LOC117597602
TU119876 lncRNA downstream 883401 18261741 ~ 18277823 (+) False LOC117597602
XM_026935368.2 mRNA upstream 297369 17041360 ~ 17065819 (+) False blm
XM_034305185.1 mRNA downstream 22086 17400426 ~ 17443468 (+) False LOC117597546
XM_034305187.1 mRNA downstream 22086 17400426 ~ 17443468 (+) False LOC117597546
XM_034305184.1 mRNA downstream 22086 17400426 ~ 17403388 (+) True LOC117597546
XM_034305186.1 mRNA downstream 22110 17400450 ~ 17443468 (+) False LOC117597546
XM_026935606.2 mRNA downstream 112529 17490869 ~ 17493092 (+) True LOC113539654
TU118951 other upstream 762121 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 1013401 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 2017220 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2838708 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 3322406 14035230 ~ 14040782 (+) False skor1b
XR_004578324.1 other downstream 22086 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 111206 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 1169585 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1173106 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1220374 18598714 ~ 18599375 (+) True G101419

Expression Profile