RNA id: XM_034305543.1


Basic Information

Item Value
RNA id XM_034305543.1
length 3209
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC113539712
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17088641 ~ 17307902 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCAGCCCCCATATACCATGTGTTTGAGAGTAAAATTCTACCCACCAGATCCTGCTGCACTCAAAGAGGAAATCACCAGACAGAAGCATCGGACAGGGGGTTGGGGCCGTTTTGTCCTAGGTGGTGGAGAGGGAAGAGCGCCacatgctgtacatcagccgCAAGCTCTCTGTGCAAGAGACTAAGTACAGCACGATAGAAAAGGCATGTCTGGCCATCAAATGGGTGGTCCTACTATTTGTCAGCGGCAGGCCAGATGGCTCCCTAGCTGGGGTTTGTGGAAGCAGGGGCGTGCTTGGGCgccagtttgtgaatggagggtggagcCGGAGAGGgtATCTTGTCTTCCTACAGATCAAGAGAGATCTGTACCATGGCCGGCTCCTCTGTAAAACGTCTGATGCAGCTATACTGGCAGCTTACATCCTACAGGCTGAGATTGGAGACTATGACCCAGGGAAGCATCCCGAAGGCTACAGCTCCAAGTTCCAGTTCTTCCCTAAGCATTCAGAGAAGCTGGAAAGAAGGATCGCAGAGATCCACAAGACAGAACTGATGGGACAGACACCAGAATCTTCAGAGCGAAATTTCCTGCAGAAAGCACAGATGCTGGAGACATACGGTGTAGATCCTCATCCGTGCAAGGATGTGTCTGGGAATCCTGCTTTTCTTGCCTTCACTCCTTTCGGTTTTGTTGTACTTCAAGGAAACAAAAGAGTTCATTTTCTCAAATGGAATGAGGTGACCAAACTAAAGTTTGAGGGAAAATCATTCCATATATATGCAAATCAGAAGGAGGACAAAAAGATCATCTTGACATACTTTGCACCAACCCCAGAGGCCTGCAAGCACCTCTGGAAATGTGGAGTGGAAAATCAAGCCTTCTTTAAACTGGAGAAGTCGAGTCAGGTGCGCACTGTGTCTAGTAGCAACCTGTTTTTCAAGGGAAGCCGTTTCCGCTACAGTGGACGAGTAGCCAAAGAGGTGATGGAACagagtgcaaaaataaaacggGATCCACCTGAAATACACAGGTCTGGTCTGGTTCCCAGCAGAAGCTGTCCATCTATCACTTATGGGCCACGGCTGAGCAGCGTGCCACGCACACGCAGGAGAGCCGTGCACATATCCATCATGGAGGGCCTAGAATCACTGAGGGACAGTGCACACTCCACACCTGTGCATTCGATCTCACATAGCGATTCGTTCATACCTCATTCCCACAGCCAGGTGAATGAGTATGGCAATGTTGCAGAAGTAATTGCTGAGGACAACTACAGCCCATCGGACAGCGTTCTGCCTACACCAGTGACCGAGCTCAGTCCGGAGCCAGCTGCTGTCACCACACGTCATGCTAATGGAACTCCCTGCAGTactgaggaggagaaggaggctGAGCAGAGCACAGTGGTGGTGAGAGAACCAGGTGAACCAGGAACAACAGCAAGCACTGCACTGGTGGTGCCTGTCGTCACAGAGGTGGAAGACGTGAACAAGTTTGTCCTAAGCGTCCTCCGTTTGCTCCTCGTAACCATCGGACTCCTTTTTGTtttgctcctcctcctcatcattcTCACAGAATCTGATCTGGATGTGGCCTTTTTGCGTGATATCCGCCAAACACCTGAGTTTGAGCAGTTTCATTACGAATACTTTTGTCCCCTCCGACGGTGGTTTGCCTGTAAGCTGCACTGGGTGGGGGGCCTGCTCATTAGCAAATAAGAATAAAGTGCAGAAAAGAGTGAATCAAGTGAAAtatggatgagagagagagagagagagagaatggggcAGCAAGCTTGAATGCAACAAAACGCAGCTCCTGATTCTGGCAAAGTGCCAAGAGCTCGCCATCTTCTTCTTCCCTTTAGCCCttctatttttgtgttttgacaTTGTTTGTACatctgttatatattttttataccttctttcttttatcattatttttatgaGATGATAccttttttgattattttcccttttggaacaacaaaaaacaaaacaaaacagaagaacAAGAAATAACTTGAGTTTATTTAACTATAACACATACTTCATTACTGTTCATTATGCATTTATGGTAAATCTTTTAGGAGGTGGCACAAGAAGCTACAAGCCAATTGTTTAAGTGAGGTTGGAAAAAAATGGAGTTTATGAAGAAATGGATTTGAACATTTTTGGTAGACAAGGAATCCCTTCAACAGAATTCACTCTCAATTCCTCCCTCATTTGCCTGTTAATAATTTATACAATttctaattataatttatatattataatttattaggGTGCTATACCTTAAAGAAAATAACTCAAGCACTGATTAATTAATGAGCAGCAATTCACTTAGCACGTGGTTCAAGAAGTTGGTTCAAGAGGTGGACTGTTAGTGGAGTGAGTGTTGAATGTTGCTAATCAATAAATGGTGTGGGTACGCTGAAGTATTTTGACAGATTATTTTGAAGGcgatatggaaaaaaaaaaactgaccgtTGCAACCAGTAAATGTAGTGTTCTGCCATGTGACCCAGGCCTGTAGAGGGgcaatgtttttgtgtgtgtgtgtgttagacttaaaatatttggaaaattcAGTATGTAGCTCTTAAAAGAATCTTTTGTGTATATTGAATGTGAATttgaacagacaaaaaaaatgagcaagtTCTTCTGAGCATTCGCATATGCAAGAACAAAGGAGTGTGAGAAAGTTTGTGACTATCTTTTTGTGAGGGGAGTAAGGGAAAATTATTTAATGGTTAAATGGTTTGGGTGAAAGGGCGTAGTGTGATCAGGCTAACCAATAGCCAATTTGAACCCAACACCTCAGCTAGTTTAATCGATATCGGGTATGCGTTACTCCCTAAACTTTGATAATGTTGGAAGTTGAATGAGGTACAGAATGTAAACAAGTGGACTAATTTCTGATGTTGTGCTATATGGCcttatgaacattttcagattttcatatAATATACAGGTCATATGATCCTCTATCCAGTTCAAGCTCCTAACACCCACCTATTATTTGTTTGCTATGAcagacatttgtttatttattatggtTGAACCTTGAGGCTATGTCCTCACATGATAAAACTGAATGATGAatatgtgcacattcattttGCAGCCATTGTAGAATTTCCATTGTGGATTTATAGCCAAAACTTCTAAaagcaaaaaatgcaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119022 lncRNA downstream 154819 16920567 ~ 16933822 (-) True G100408
TU119069 lncRNA downstream 248532 16838916 ~ 16840109 (-) True LOC117597576
XR_004578338.1 lncRNA downstream 249123 16839015 ~ 16839518 (-) False LOC117597576
TU119065 lncRNA downstream 263042 16825204 ~ 16825599 (-) True G100444
TU119059 lncRNA downstream 269491 16817949 ~ 16819150 (-) False G100439
TU119311 lncRNA upstream 20234 17249178 ~ 17264409 (-) True G100663
XR_003403938.2 lncRNA upstream 116685 17345629 ~ 17354761 (-) True LOC113539580
TU119386 lncRNA upstream 178146 17407090 ~ 17407386 (-) True G100727
TU119395 lncRNA upstream 227108 17456052 ~ 17457045 (-) True G100735
TU119402 lncRNA upstream 264468 17493412 ~ 17493623 (-) True G100739
XM_034305009.1 mRNA downstream 144211 16938891 ~ 16944430 (-) True LOC117597525
XM_034304996.1 mRNA downstream 347571 16680922 ~ 16741070 (-) False chd2
XM_034305181.1 mRNA upstream 193417 17422361 ~ 17478283 (-) True alpk3a
XM_034305183.1 mRNA upstream 193417 17422361 ~ 17477608 (-) False alpk3a
XM_034305182.1 mRNA upstream 194505 17423449 ~ 17478285 (-) False alpk3a
XM_034305437.1 mRNA upstream 491601 17720545 ~ 17725320 (-) True LOC117597582
XM_034305438.1 mRNA upstream 491601 17720545 ~ 17725315 (-) False LOC117597582
TU118530 other downstream 1734004 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 2741633 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 3299794 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 3300442 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 3300855 13787657 ~ 13787786 (-) True LOC113534844
XR_004578368.1 other upstream 857711 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 958503 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 2121818 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 2751125 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 3724658 20953602 ~ 20966910 (-) True G102566

Expression Profile