RNA id: XM_026935710.2


Basic Information

Item Value
RNA id XM_026935710.2
length 2787
RNA type mRNA
GC content 0.43
exon number 3
gene id ppp1r15b
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16978935 ~ 16983976 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAAGCTCCGCCAGGGAGGATTATCAGAACACCTGACCATTTTTCGCTGCGTGCTGTGTGGAGAAGATGGAAAGCGTGTGTGGAAATGCGAGAGAGCGAAGCGCGATGCAGCGCGTCAGCCACAGCGGCATGGCGCTTTTACCGTGGACCAGACAGATCCTGACAGTACTATGGGAAAACGTCCGCTTAATGCTTCAAGTCATCTGTTGCAGCTTAATGGCAGTTTTCCAGATGTTCAGGTTTGAAGTTCACCTGCGCATCACAGATGACACAGGAGAACATATTCAACACATGACGAATGGCCATGGAGATACCGAAGGTTTTCTCCTGTCATCACTGTTTGAAAGCAACAAGAATGTTGTAGTGGCAGGTCCGAGTCCTCTGTCAAGGTTTAACAAGGATCCTTTCAACCTAAACTCACATTCCAGGTCTGTTCTATCCAGTCTTGTGAATGATGATCTCTGCTGCTCACTGGTGGACAATTTAGTATCCTGTGCAACTGAGTGTCTCAATGATaatgaagatgtgtgtgtaggagagcAGTTTGGCTGGAAGCACAGATTTGACTGGAATTTTCATACAGGCTTAGAGAGTAGAGTAGATGAAGAATGTGTATCGAGTCTTTATGAGAAGGATGTTCAGAAACAGAATGATTGTTGTACAGGATTGGAATGTAATTTTTCAAGGTTAAAGTTCAAAAGTCAAAGTTCAGATAGCGAGTTCAGCTGGGGCAGCTCAGACAGTTCCTCCATAGATAGGGAGCGAGAGGATAGCGATGGGCTCTGGGATCTTCTTAGGTGTTCCAACGATCCATACCACCCACTGCACTTCACAGCATGTATGTCCAGTGCAGTTGCTAATAGACAGAGAACACAAACAGGATCAAGTCAGCAAAGAAATGAATTCACATCAACACCATCTAGTGTGTCCTGTTGCTCAGATTCTAGTGAGCAAGGAAACACTGGAACTGTCAACTCGGAAGACGAAGAGGAGGCATTGTGGAAGTCTCTGTCTCGGGATGACGACCCTTATCACCCATTGAATTTTAGAGCTCCTCTCAACAGTTCACATGCATTTACAGACTCCCATGAGAAAAGCCCTAAAACATCCAGAGACCCCAAAAGCACTAGATTTCCCAAGCCATTTTTGATGCAAAGGCAAGTTGTCAGTCACCGGTGTCCTCAGTTGTGTGTGGAGAAGCCAGCTAAAGTGCCCTGGAAAAGGCCCAAAAATAAGACTGTTGATGCCACCATGACAAAGAAAATTTCTACTGTGAAacagGTGAAATTCTCTCCAGTTGTACAAATTCACAAGATGAGAGCCTGGTCGTTTGCTCTTCAAGCGTGCCGTAAGGGGCCATGGGAGGAGCATGCTCGGGATAGGGACCGTTTCCAGAGGAGAATTTTGGAAACAGAGCAGGCCATTGGATATTGTTTGATGCGATCTCACAGAGATAAGTTTTTGATCTATCACCAAAGCACCCTACCTAAATAAGCATATTCCAGGAAGACTTTCTAAGCTTAACTGAAACCCTGGACTGGTTCTGTTAACAACTCTGCTGTGTTGTGCACACAGTTTTCAAGCTCAAATCTGTTAACAAGTCTACATATATTCTTTACAGTGCCTTATAGACTAGTAATGAAAATGACAATGTGACAGCTATCTTACCATAAATGTAGGTGGCATATATGGTAGAGGCCGTTGTTTTTAAGTGATGAGGAtacaaaatgtttctgtttctacACTCTATATTTTTGGCTATTTTGAGAAACTGCCTtctgtattttgtattaatatGGTTTCTTGTTTTTGTCAGAGAATTTAGTAACCCTGTAAGAAGAGTGTGTCTAAGAGAGGGGTTTAAAAACAATGCATGATGAAACTCACTCCCCTGAGAAGAAATCAATTAGCTTCTCCCCTTGACACACCATTGGATGCACAAACTGCATGGTGCAAAGAGGAGCAATAATGTAGGCAATCTTTAACAAACATTATCACAGCAGATCTTTTTCCTTTGTGCAAAAGTTGTAAGTTCTCCCTGCTGCACACACTTTTGTTAGCAAGCAGGCTTTATGGGGGGGAGGGGGAATCAGTTTTCCCATTGCTTACCCGGCTATAACACAGTCTGTCATTGTTGTGTAATTGTAACTGACACAGCTAGAGATCCagttacatttgtgtgtgtgtgtgtgtgtgtgtatactactGAGTCTCACGCCATCTCTACTGATGCTGTAGTGTATCTGGTTGCCAGGCAACAAAGAGAGCTGTGCTTGGTGGCTCTGAAAGTATTACAGGAGATTGCAGCAGGAAGAGTGCATTGTGGGAGGGTAGCCAGCATGGTCATGATAGAGAATGGTGAAGCTAAGAAGGTGGGAGTGGATGTGACTGGATCTCTGGAGTCTCAATTACACTGTTCAGACTGTCTGATGCAATCAGCAGCCTTTGTGAGTTAAACACAAAAGGTAGCATAGGCAAGCTCAAATAGTCCCATAGGGTATCTTCCCACTTTCTTTTGGTGAAATGTTCCACACTCCTGTTATGCTCTAATCAAGCTCAAACTTATAGAAAATGCTAAGTTTGTTGTTAAATTGTGTTATTTCTGTAAAAGTTTGATCAAAATCAGTTTAAATATTCAGCATATAATGTCTATGAAGGTTCTTAATTCAGGTCACTTTGCACTGTCTGTTTGATAGCATGTCTTGAAGATATTTTGTCACTCATTCAAGGAAAAACCAATGAAATCCCTCAGATGAGTGGAAAACCTGCTCCCGATCTACCCTGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119104 lncRNA upstream 6697 16971830 ~ 16972238 (+) True G100480
TU118986 lncRNA upstream 39207 16938735 ~ 16939728 (+) True G100379
TU118977 lncRNA upstream 155833 16822368 ~ 16823102 (+) True G100370
TU118968 lncRNA upstream 218401 16760311 ~ 16760534 (+) True G100362
TU118966 lncRNA upstream 220592 16758139 ~ 16758343 (+) True G100360
TU119131 lncRNA downstream 26739 17010715 ~ 17024228 (+) True G100499
XR_004578316.1 lncRNA downstream 54075 17038051 ~ 17039276 (+) True LOC117597540
TU119127 lncRNA downstream 103978 17087954 ~ 17090706 (+) True G100495
TU119167 lncRNA downstream 166977 17150953 ~ 17152232 (+) True G100532
TU119168 lncRNA downstream 170730 17154706 ~ 17154971 (+) True G100533
XM_034305391.1 mRNA upstream 50293 16838875 ~ 16928642 (+) True srpra
XM_034305393.1 mRNA upstream 50293 16838876 ~ 16928642 (+) False srpra
XM_034305394.1 mRNA upstream 50293 16838876 ~ 16928642 (+) False srpra
XM_034305392.1 mRNA upstream 50293 16839669 ~ 16928642 (+) False srpra
XM_026927242.2 mRNA upstream 162663 16764695 ~ 16816272 (+) True slco3a1
XM_026935369.2 mRNA downstream 57381 17041357 ~ 17065819 (+) True blm
XM_026935368.2 mRNA downstream 57384 17041360 ~ 17065819 (+) False blm
XM_026935366.2 mRNA downstream 57393 17041369 ~ 17065819 (+) False blm
XM_026935370.2 mRNA downstream 57393 17041369 ~ 17065819 (+) False blm
XM_026935367.2 mRNA downstream 57393 17041369 ~ 17065819 (+) False blm
TU118951 other upstream 377868 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 629148 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 1632967 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2454455 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 2938153 14035230 ~ 14040782 (+) False skor1b
XR_004578324.1 other downstream 416450 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 505570 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 1563949 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1567470 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1614738 18598714 ~ 18599375 (+) True G101419

Expression Profile