RNA id: XM_034304947.1


Basic Information

Item Value
RNA id XM_034304947.1
length 2233
RNA type mRNA
GC content 0.51
exon number 13
gene id si:dkey-205h23.2
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26913328 ~ 27063061 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagaaagatggctACAGTGGCGGCGAGCGGAGTGCAGCAGGAGAATGGCTTCAGCACCGCGAACAGCTCCAGCAGAATGAACGGCATTGCTCTCGGTCAGAGCTCCATACCCATGAAGGACCACGACGCCATCAAGCTGTTCGTGGGTCAGATCCCACGCAACCTGGAAGAGAAAGACCTCAAGCCGCTCTTTGAGGAATTCGGCAAGATCTACGAACTCACCGTGCTCAAAGACAGATTCACGGGAATGCATAAAGgATGTGCCTTTCTAACTTACTGTGCCAGGGAGTCTGCGCTGAAGGCCCAGAGCGCTCTACATGAGCAGAAGACTCTGCCTGGGATGAACCGACCCATCCAGGTGAAGCCGGCAGACAGCGAAGGACGGGGAGaaGACCGGAAGCTCTTTGTGGGGATGTTGGGGAAGCAGCAGAGCGAGGAGGATGTGCGCAGGCTCTTTGAGACGTTTGGCCAGATTGAGGAGTGCACCGTGCTCCGGGGGCCTGATGGGGCCAGTAAGGgcTGTGCCTTTGTCAAGTTTTCCAGCCATGCAGAAGCGCAGGCAGCCATCAACAGCCTGCACGGTGGTCAAACCATGCCGGGTGCGTCCTCCAGCTTGGTAGTGAAGTTTGCCGACACGGATAAAGAGCGGACCCTGCGCAGGATGCACCAGATGGCGGGCCAGCTTGGCATCTTCAGCCCCATGACTATCCAGTTCGGGGCCTATGGAGCCTACACACACGCTATGATGCAGCAGCAAGCGGCGCTCATGGCTGCCACACAGGGCTCCTATCTCAACCCCATGGCGGCCATCGCAGCCGCTCAGATGCAGCAAATGGCAGCTTTCAACGTCAACGGCCTGGTAGCTGCCCCAATGACGCCCTCTTCAGgcACCAGCACACCTCCAGGCATCAGTGCCACAGCAGTGCCCAGCATCGCTGCTCCAATCGGGGTGAATGGCTTCAGCGCACTGCCTCCTCAAAGCAACGGCCAGCCAGCCTCTGAACCCATCTATACCAATGGAATTCACCCCTATCCAGCACAGAGTCCAACAGTGACCGACCCTCTCCAGCAAGCATACGCCGGCGTGCAACACTATGCAGCAGCCTATCCTGCCGCCTATGCGCCAATCAGCCAAGCGTTTCCCCAGCAACCAGCCATCATCCCCCAGCAACAGCGTGAAGGGCCTGAAGGCTGTAACCTGTTTATCTACCACCTGCCGCAGGAGTTTGGGGACGCTGAGCTCATGCAGATGTTTCTGCCCTTTGGCAACGTCATCTCTGCCAAAGTCTTCGTGGACCGGGCCACCAATCAGAGCAAGTGTTTCGGCTTTGTGAGCTTTGATAACCCATCCAGCGCTCAGGCTGCCATTCAGGCAATGAATGGTTTTCAGATTGGCATGAAGAGGCTCAAGGTCCAGCTGAAGCGGCCAAAAGATGCCAACCGCCCTTATTGATTGCACCAACATCCACATCCAGGATGAAGGATGACAACACCTTATTTTCACAAGTGCAGTATAAGTACAAAAGACTTCTCCGCTCTGCCACACGAAAGAAGAGTGGTCCCTTGATTCTGTGGGAAAATTGCCGAGAGATGTGAGACTAGGTGACTGAAGGAACAaggagggatttttttttctttttttcttggctaaatatttccttttttatttactcgCTTTGGCATCGCAAACCTGTGGAAGCCGATTTTGCAGAGACCAActtttttgctgctgttttttaGTCAAGATGGAGAAATATTTATAGATACATTATGCTCAAAGCAtgcatatacagatatacaatCACACATGCAGTCAAACACACgtatctatctctctcacacacacacactcacacacacacacacacgcaaaactAGACAAATTTACAGACACAAACCCTTTGCACTTAGGCTGATGCAtaaatgcactgcaaaaaattcatattttggaTACTGGTTAATACTGATATCTCTATTTGTAAATCCATAtgaatgcgcacacacacacacacacatacacacagacacgcatacacgcacacacgcgaacgcacacacacacacacacacacaccagcctgcTGCCATTTTGGTTTTTGTGCCTATACAGGTGTTGTAGTCTGTGCCAGGGAAAGCTCTGGAAAGATGGAAGAGAAAATGGTAATCCAGGATTATTTACATGCATCATTCCTTAGAAAATAGGGACCAAAGGActacatgctttttaaaag

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124808 lncRNA upstream 215150 26697978 ~ 26698178 (+) True G105548
TU124739 lncRNA upstream 221651 26691434 ~ 26691677 (+) True G105490
TU124727 lncRNA upstream 302068 26610941 ~ 26611260 (+) True G105479
TU124690 lncRNA upstream 381240 26531335 ~ 26532088 (+) True G105449
TU124691 lncRNA upstream 385521 26525920 ~ 26527807 (+) True G105450
TU125000 lncRNA downstream 294 27063355 ~ 27063862 (+) True G105733
TU124999 lncRNA downstream 1630 27064691 ~ 27066023 (+) True G105732
TU125117 lncRNA downstream 66287 27129348 ~ 27129629 (+) True G105841
TU125136 lncRNA downstream 78784 27141845 ~ 27145031 (+) True G105855
TU125251 lncRNA downstream 166723 27229784 ~ 27234224 (+) True G105904
XM_026913268.2 mRNA upstream 37996 26850962 ~ 26875332 (+) False LOC113526325
XM_026914232.2 mRNA downstream 42405 27105466 ~ 27107571 (+) True LOC113526836
XM_026913265.2 mRNA downstream 57124 27120185 ~ 27128413 (+) True LOC113526324
XM_026914193.2 mRNA downstream 463062 27526123 ~ 27545526 (+) True ddx11
XM_026914194.2 mRNA downstream 463062 27526123 ~ 27545526 (+) False ddx11
XM_034304962.1 mRNA downstream 495379 27558440 ~ 27600569 (+) False iqsec3b
TU124829 other upstream 79901 26830978 ~ 26833427 (+) True G105569
TU123982 other upstream 1598115 25294899 ~ 25315213 (+) False G104781
TU123976 other upstream 1606517 25294899 ~ 25306811 (+) True G104781
TU122935 other upstream 3171013 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 3283605 23615103 ~ 23629723 (+) True G103830
TU125244 other downstream 148328 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 495775 27558836 ~ 27558946 (+) True trnal-caa_8
trnal-caa_9 other downstream 497326 27560387 ~ 27560497 (+) True trnal-caa_9
XR_003402810.2 other downstream 881729 27944790 ~ 27966308 (+) True LOC113526832
TU125656 other downstream 896464 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile