RNA id: XM_034304992.1


Basic Information

Item Value
RNA id XM_034304992.1
length 8371
RNA type mRNA
GC content 0.45
exon number 38
gene id chd2
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16680922 ~ 16741071 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTGCTGGATTTAAACAATATTGAATTGTGGTTGTGCAAATATAAAAGAATTAATGGTACAAAAGTATGCTAACAATGCTCAGGTCTTAAAGCAAACCTTATGTAAAGCGTGAAGATGTCCTAAAATGGTGTCCTCCACAGTCCAAAGCTCTAAAATGGCTCCCAATGTCTCATTTCCTGTCTGAGCAGGAAGTGATGGTGTCCTGAAATTTTTATATCCCCTGAAAACACAAAGTAGTAGGCTCTAAGATTACTCACTGTATACTTATACATTCTATATCATTGTTTTGAGTTAGTACACAGAGTTAAAACTGAATACACTGAAGAcagatttaatataaaataaaaggggTGGGCCTTTTTGTACATCACCTGAGTCTGGGCTAAATCGAGAGAACGTCAATCAAAGGCTAAAGCCTGTGCGAGCTGGGAAGGAGCTTTAGATGGCGGATGAGCCTTGGGAAGGGGAACCCGTAGAGCTCGTCGACAGCACTTCTCCCTCAACTTTGAACTTTAGCGCTCGTGTTCGGgcttatattttaaaacattaggTTAATTTGAATTGTATCTGAATGTAGAAATGTCGTCGCATTGTTTTTGCGGTTTTATTTCGTCGAGAAAATATGTGCCGCTTTAACGTAGTCGTTGTTTTCTGTGCCTCGCGCTGGCAGCCATGGCTGTCCTCCATTTTTAGTGCGCTGCGCGCGGCTCTTTAGAAACTCAGCTCTCCATTCAAAAGGCCATTGTTGCTTTTCTTACATATATTTTTCCccttataaataatatttcgAATTGTATTGCTATCCGGATCTATCGAGATCTgggtatatttttctttttgttgtcgGAGTAATAAGTTCGATATTTTTATTCCGGCTGTGGATGTTACTGCTCCCTACATGTATTTCTCTACCTGTCTATGGAATAGGTATGTGTACgttgcaggttttttttgcGATCGGTTGTATTTTGGTTCTTTTAAAGATGTTTTCAGTCGTCCTTTGTCCTGATGACGCAGTAAGAATTTATGCATGTGGGATCTATTGCATTAAAAGTCTGAACTCGTTTGTTGCTTGTGACACCGAGCGGGTATCATTTAATTCccagtttttttatttctcataatatttcctgttatatttgttcttttttttcggCAAACGTGTCAAGGCTGTTCATTTTTCCCTTACGAGGCAACGGGGGACTTTTGCAGTCCTGAAAGCAAAAGCAGGACTGGTCGGACTTGCATGATGGTTTCACCCCCTCTCAACTTTTGACAGTTTAATACATAGAGTAAAGATCATCGTTAACAGTTAAACAATATAACCATGTTGAAGAACAAGGACAAAAAGGAAGGAGACGACGCTTCGACTCAAAGCAATGCTTCAAGCAACTCTGCATCAGAGGAGTCGAATCGTTCAGGCTCGGAGTCGGGCAGCCAGTCTGAGAGTGAGCAGGGCAGTGAACGTGCACACTCCCAGCATTCCGAGTCCAACAGCACATCCGAGTCTGAGAGCTGCTCTGAATCTGGGAGTGAATCGGCTGGGTCGAAGTCACGCCAGACCATTGCAGAGATCAAAGAGAAACGGGTCAAAAAGAGAGACCTGGCTGATGTGAAAAAGATGTGGGAGGAACATCCAGATGTTTATGGCGTCAGAAGGTCCAATCGGAGCAGACAGGAGCCTGCTCGTCTGAATATTGGAGCAGAGGGCAGCAGTGAGTCTGAGAGTGAAAGCCACAAAAGAAAAGTATCacgacagaaaaagaaagaAAATACCTGGAAAGATGACTCAAACGACGAAGATGATGGTGAGGAAGAAGCCAGCAGTTCAGAGAGTgagcaggaagaaaaaaaagttagatcCAGACGACTTCCTGCTAGAAGGCCACAGGCCAAGTCATCCACACCCAAGCAGCATCAGTCTCAAAAGGGACGGAAACAGAAGAAGCAGGAAACATCCGAcgaggatgaagatgatgacgacgatgatgaggaagaggataCTCCAAAGAGACAGACGCGGCGAAGAGCAGCTACTAAAGTTAGTTATAAGGAGGACCAGCATGATTTTGAAACTGACTCTGATGACCTGATTGAGATGGCAGAGGGGACAGAGGATGTGCAGGATGATGACAGTGAGACCATTGAGAAGGTCATGGATACCAGGATTGGCAAGAAAGGAGCTACTGGAGCTGCCACCACACTCCATGCTGTAGAGGCCAACGGAGACCCTTGCGCAGATTTTGAGCCTGAgaaggaggaaggggagaatCAGTTCCTTATCAAATGGAAGGGCAGGTCCTACATCCACAACACATGGGAAAGTGTGGACTCGCTCACTCAGCAAAAGGCCAAAGGGATGAAAAAACTGGAAAACTTCAAGAAGAAAAATGAGGAGCTCAGTGCTTGGTTGAAAAAAGCCTCACCTGAGGATTTGGAATATTACAACTGTCAGCAAGAGTTAACCATTGATCTGAACAAGCAGTTTCAGATAGTGGAGAGAGTCATTGCAATGAAAACAGGGAAGTCACAGGTGCCCTCTGATTTTCCCTCTCATAAGACCACATCTAACGAGCCTGAGTACTTGTGTAAGTGGATGGGTCTGCCCTACGCAGAGTGCACGTGGGAAGATGGTGCCTTAATAGGAAAAAAGTTCCAGTCTTGCATAGATAGTTTCAACAACAGGAATGTCTCCAAGACTATGCCCTCCAAAGACTGTAAGGTGTTAAAACAGAGGCCCAGATTTGTGGCTCTGAAGAAGCAGCCCTCTTATATTGGAGATGAGAACTTGGAGCTGAGAGACTACCAGTTAGATGGGCTGAACTGGCTTGCCCACTCTTGGTGCAGGTGTAACAGTGTTATCTTAGCTGATGAGATGGGCCTGGGGAAGACCATCCAGACCATTTCATTCCTTTCCTACCTGTTCCATCAGCACCAGCTGTATGGGCCCTTCCTCTTGGTTGTACCCCTCTCCACACTCACTTCCTGGCAGCGCGAGTTCAGTACTTGGGCTCCTGACATGAACGTTGTGGTCTACCTGGGGGATGTTTTGAGCAGAAAGACGATTCGTGATTATGAGTGGATTCACCAGCAGACCAAAAGAATAAAGTTCAACACACTTTTGACCACATATGAAATTCTACTCAAAGATAAGGGTGTTTTGGGAAACATAAACTGGGCATTTCTCGGTGTGGATGAGGCTCACCGGCTAAAGAATGATGACTCTCTGCTGTATAAAACACTAATAGATTTCAGGTCCAACCACAGGCTACTCATAACAGGAACACCGCTGCAGAACTCACTCAAAGAGTTGTGGTCCCTCCTGCACTTTCTTATGCCTGACAAGTTTGAGTTGTGGGAGGATTTTGAAGAAGAGCATGGTAAGGGCAGAGACAATGGCTACCAGAGTCTTCACAAAGTGCTTGAGCCCTTCCTTCTACGTCGTGTAAAAAAGGATGTGGAGAAATCGCTGCCTGCCAAGGTGGAGCAGATCCTCCGAGTGGACATGTCCGCCCAGCAGAAACAGTTCTACAAatggATTCTCACAAGGAATTACAAAGCCCTATCTAAAGGCACCAGAGGCAGTTCCTCAGGCTTCCTCAACATCGTCATGGAGCTGAAGAAATGCTGTAATCATGGCTTCCTCATCAAGCAGCCAGATGAGGGAGAAACTGAAAATCCTCATGAGCACTTGCAGGCACTGGTCCGTGGCAGTGGGAAGCTTGTGCTCTTGGATAAATTGCTGACAAGACTGAGGGAACGAGGAAATCGTGTGCTTATCTTTTCTCAGATGGTCCGTATGCTGGACATCTTAGCTGATTATCTGGCCATGAAACGCTGTCCTTTCcagAGATTGGACGGCTCCATCAAGGGAGAGCTCCGGAAACAAGCACTTGACCACTTTAATGCGGAGGGTTCTGAGGATTTCTGTTTCCTCTTATCCACTCGTGCTGGAGGTCTGGGCATTAACTTGGCTTCAGCTGACACTGTGGTCATCTTCGACTCTGATTGGAACCCTCAAAATGACCTGCAGGCCCAGGCCAGAGCCCACAGAATAGgccaaaaaaaacaaGTGAATATTTATCGTCTGGTCACAAAAGGCACTGTGGAGGAGGATATTATTGAAAGGGCAAAGAAAAAGATGGTGCTAGACCATCTTGTCATACAGAGAATGGACACCACTGGAAGAACAATACTAGACAACAACTCGGGCAATTCAAATTCAAATCCATTTAACAAGGAGGAACTGGCAGCTATCTTGAAGTTTGGTGCAGAAGATCTGTTTAAAGAACCTGAAGGGGAGGAATCAGAGCCACAgGAAATGGACATTGATGAGATCTTGAGGCTTGCTGAAACCAGGGAAAGTGATCAAGGTTCTAGTGCCACAGATGAGCTCCTGTCTCAATTTAAGGTGGCTAACTTCACCATGGATGAGAGCACACCAGAACTGGAGGAGAAGCGGACCTGGGATGAGATCATTCCAGAAGATCAGAGGCGGcgggtggaggaggaggagaaacagaaagagatggaggaTATTTACTTGTTGCCCCGGAGCAGAAGCTCAAATAAAAGAGCGCAGGCAAATGACAGTGACAGCGATGTTGGCTCAAAGCTCAAACTGAAGAGCCACTCGTCAGGTTCAGAGAGTGAGACGGATGACAGCGAGGACGATAAGAAGCCCAAGCGGCGAGGCCGGCCACGTGCACGCAAAAACAACGTGGAGGGTTTCACAGATGCTGAGATTCGCAGGTTCATAAAAGCTTATAAGAAATTTGGCGCTCCACTTGAAAGGTTGGAGGCCATTGCACGTGACTCTGAACTGGTGGACAAATCCATAGCAGATCTAAAGAGACTAGGAGAGCTGGTGCACACCACATGCGTAGCTGCAGTACAGGAGCACGAAGAACAAATGAAGGAGAACCCCACCGAAGCTAAAGGGCCAGGAAAAAGGCGTGGCATTAACATCAAGATCTCTGGGGTTCAGGTAAATGCTAAATCCATCATCCAGCACGAGGAAGAGTTTGAGCCTCTGCACAAGGCCGTGCCCTCCAGTCCCATCGAGAAGAGCAAATTTCAGCTGAGCTGTCGTGTGAAGATGCCACACTTTGATGTAGATTGGGATGTGCAGGATGACGCACATCTGCTGTTGGGCATCTACGAGCATGGATACGGCAACTGGGACCAGATCAAGACTGATCCTGAGCTGAAACTCTTGGACAAGATTCTTCCAGACAACCCTGATAAAAAGCCACAGGCAAAGCAGCTGCAAATGAGAGCTGATTACTTGTTGAAAATCCTGAAGAAGGAACAGGAGAGTAAAGACACATCCAAAGCAGAAGAAGAGTCCCAGGTAAAGAAGAGAAAACCTCGAGTAAAGAAAGACAAGACCCGAAAAGATGAACTAGCCAGTGAAATCTCCTCTCCTCATCTTTCTGAACATACTTCAGAGGAAGGTGAAGTGAAGGATGACAGAGCTGAAAAATCCCCCacaaagaagaaacagaagaaggacaacaaagagaacaaagaaaagcagGGCACTGCAAAGAAAGACAAGGAGGGGGACAAGGACAAAAAACGGACAAAGCTCAAGAAAGAAAAgACTAAATCAGGAGGCAAAGGCAAGAAAGCTCAGGGCCCTGTGCACATTACAGCTGGCAGTGAGCCAGTTCCTATTggagaggaggatgatgagCTGGACCAGGAAACATTCAGTAttTGTAAAGAGCGTATGAGGCCCGTGAAGAAGGCTCTTAAACAGCTGGATAAACCTGATGAAGGCCTGTCAGTGCAGGAACAGCTGCAGCACACACGTGCCTGCCTGTTGAAGATTGGAGACCGAATCACAGAGTGCCTTAAAGCCTACAGCGACCCAGAACATGTGAAAACCTGGCGCAGAAATCTCTGGATTTTTGTGTCCAAATTCACGGAGTTTGGAGCTAAGAAACTGCACAGGCTATACAAAATGGCTCAAAAGAAGCGCTCCCAGGAAGAAGAGAAAGAGCACAAGAAGAAAGATGATCCAGCCAAAAAGAAGCCGTTTCGTCCTGAACCTTCTGGATCAAGTCGGGACTCTACTGGCACACAGCCATCATCCAAATCACACCCACCACAAAATCACCCAACAGGACCCCCATCCCACTCACACCACCGTGAGCCCTACAACCAGCACAACAAGAGACACTTCCCTAATGATTATCGGGGAGATTGGCAAAGGGACCGTAAATATAACTACCCAGGAAACAGTAACCAGCCATGGCAAGGTGACCGCCATCACCCTTACGACCAGCACAGGTACAAGGAGCATCACTACAGCAACCGGCGGGCACACACAGACTTGTACCGCAGTAGTGGCTTCCGGAACCCAGGCTCAGCCCGTAAACGGGTGTATGATCAGTACAGCAACGATCGAGACCACCGTGCTCACCGTGACTATTACGACAGGCATCCAGACCCAAAGAGGAGACGCTCGGATGACTACCGCTCTGCAAACTACCAccagggtggaggtggaggaggctACGGTCAGGACTTCCGGAGGATGCCTGATCATCGGGGTGTCCCGGGGCCTGATCATTACCGGCCGTTTCACCCAGACAAACCCCCTCCTCTGCTGGACCCGCGATCTCCTCAGGCGCAGAAATCCCCACTTGAGTCACTCTCACCCCTGGAGAGAACCACTGAACCCAAACCCAGCCCAGATCTCAACTGGAACAGAAAGACGTGATTCAGTCCTCAATACTAGTGGACTATGTAGGAAGGTACCTTGTTGAGACGGGGCCACCAGTTCTTTCCTACACCTCTGAACTGATGATCCAATAGGTGGAGCTCAAGCATCCATGTTCTTGAGCTCTCTGGGTCTTTTGGGGCTAAAATGAGTTAAAAGAATGAAGCCCTGTTAGTCCTATGGactactggaaaaaaaagagaaaaaaaagcctttgaAGTATGACCGGATTTGGAAGCTTGGAAGTGCCTCGCTTGTTTGTATTTTCTTCAGTCATTAGTAGAAAAGAGAGTATTCCCAGTACAAATGCTACTttgatgggtttttttgttgctttgctTTGTGCAGAGGTTTATTCCAGTAAAGTAGGCTTTGTGAAGAAAAGATAATCTTCAACCACACCATTAGATGTTAATTAATCTGAGTTGTTTTCATCTTGTGTTATGTAGGAGCACCCCCTGTcctatacattttaatgttttccctgTTCCCAACACACCAGATTCAGCTAATCTGCTAATTGGCAGCCCTTTCTGTGTTGAAGTATTTTAGaggagggaaaacactaaaatgtacagGACAGGGAGTTCTTCCAGGACCAGGGCTAGGAACCTATGATGTTTTGAAATAGAGTTATATCTTTTTTGCCCCACTATACCAATAAGAAAATTATGCTCAGAATGTGTCACCAAGTGGGTATTTGTACTTTTGTTATGGGCCTGAATGACATAAGAAAAATGACCCCATGTCCCCACAGATGGCTGATTGTGTAGGTTAAATTTGCTCTAACCAACCACACAGTGAGAGAAATCTGCATCAGTGCAGGCCTTGTTGATAGAACACtaaataataactaaacataaagctgtattttttcttctgtggctAAAGTTTGCTCTTCTTTATCTGTCACGTAAGTATGTGTAGCCTAATCATAGGTACTGTTGGATATTTACATTGCACTAAAAGTATCGTACTCTACAATCTCCAGGTATAAACAGTACGAATGTTGACATGATGTTAAGTGGAAATGTCTATTGGAGCAAAAGCTTGTGAATGAAGCAGGAAATTTTGAGCTTTTGATTGACCAGTTGTAAAGCCAAAATTAGACTGGCATGCTGgtaaataagtttttttttgttttttttcttcccccgtTCTTTACGTTTCCCCTCCATCTGTGCCTTATTCTTGTGTCTAATGAAATGCCGGGGTTTTAGTAAATTGCATTAAGGAGAAACATCGCATTATCCCAAATAGGGCATATGGTGCGCTACCTAGGGTGTAGAAGTCATTTTCATACTCTCTGTAGTGCATGTATCTAGAGAGAAGGGAGGCCTTTGGGATTTTGGCAGTTTTTAAACAAGATCTTTCGATGGAAAAATGCTGAGTATTTTTGGTGCCTGTTATGGACTGTGGAGACTTTAGAGAGAGTGGAAAACACCACTTTCTCACAGAGGAACAGAGGTATGTGTGTTACAGGGAGTTGGAACTCATCTCTCTTTCCTCCAAGAAACTCTTTATTCTTTAAGTACCAATTAAAGTAATTTATATTTGTGAAAACAGCCACTGTTCACATGAACTGCACTgtacatactgtttatacacCTGTATGTATTAAACTTTGCTACACCATGCA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K20091 CHD2; chromodomain-helicase-DNA-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119012 lncRNA downstream 12382 16668198 ~ 16668540 (-) True G100405
TU119009 lncRNA downstream 14868 16665837 ~ 16666054 (-) True G100402
TU119006 lncRNA downstream 23013 16657646 ~ 16657909 (-) True G100399
TU119004 lncRNA downstream 25685 16654940 ~ 16655237 (-) True G100397
TU119003 lncRNA downstream 64698 16615908 ~ 16616224 (-) True G100396
TU119018 lncRNA upstream 379 16741446 ~ 16750266 (-) False G100406
TU119013 lncRNA upstream 416 16741483 ~ 16750266 (-) False G100406
TU119014 lncRNA upstream 416 16741483 ~ 16751026 (-) False G100406
TU119015 lncRNA upstream 416 16741483 ~ 16751026 (-) False G100406
TU119016 lncRNA upstream 416 16741483 ~ 16751026 (-) True G100406
XM_026927644.2 mRNA downstream 70612 16581362 ~ 16610310 (-) True LOC113534689
XM_026927326.2 mRNA downstream 597309 16074947 ~ 16083613 (-) False nr2f2
XM_026927325.2 mRNA downstream 600657 16074947 ~ 16080265 (-) False nr2f2
XM_026927324.2 mRNA downstream 600657 16074947 ~ 16080265 (-) True nr2f2
XM_026927603.2 mRNA downstream 1181670 15486013 ~ 15499252 (-) True hsf4
XM_034305009.1 mRNA upstream 197824 16938891 ~ 16944430 (-) True LOC117597525
XM_026935694.2 mRNA upstream 347574 17088641 ~ 17307902 (-) False LOC113539712
XM_026935693.2 mRNA upstream 347574 17088641 ~ 17307902 (-) True LOC113539712
XM_026935696.2 mRNA upstream 347574 17088641 ~ 17246467 (-) False LOC113539712
XM_026935698.2 mRNA upstream 347574 17088641 ~ 17233703 (-) False LOC113539712
TU118530 other downstream 1326285 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 2333914 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 2892075 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 2892723 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 2893136 13787657 ~ 13787786 (-) True LOC113534844
XR_004578368.1 other upstream 1345588 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 1446380 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 2609695 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 3239002 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 4212535 20953602 ~ 20966910 (-) True G102566

Expression Profile