RNA id: XM_034305028.1


Basic Information

Item Value
RNA id XM_034305028.1
length 1773
RNA type mRNA
GC content 0.42
exon number 9
gene id fam169b
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14640960 ~ 14648967 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGGTTATTTTGCACCTTCAAAATGGAGTCCAACTGTAACTTGCCTGCTGCAAATCAAGTGAATTCCTACCCAGTGGACCTGCCTTGTCAGGATTATGACGCACTGTgccctgactctgaatacctgTCAAGTCTTGAGTCAGACATGAAGTCATTTCGCCTTCCCAGTGGAACAGAGGTAAACGTAACTCATGACAATATAGGCAAGCTCAGGCTGTTTGGCGAGGATGACCCACCTCATTACCTTCTCGCCCTCCATTTACCGGGAGATGAAACCCAAGTGGTTGCCATATACATGCATCACAAATGGTGGCCCATCAGTGATGTTTTGAAGACATCCAGCAAATCCAGAAATGGACTTGTGTTTGTGGAGTCAGTGATGGAGAGAGTTATACTATTCCTGCTAAGTCAGGTTGTGTTTGGAATGGTGGAAAGGTCTCTGGGAGAACACGTGTATTTCTCAACTCATCCTGTGTCAGAATATGGCAAAATCTTCTGGCAAGATGGAGAAGCAGTTGGCTTTTACACTGTTAAAAAGAAAGgAAGCCTGTGCAATGGATGCACTGGTCAGAGTTACCTTCTCCCCGTGCTGGACACTGTGTTTGTGCGCAGCCACTGGAGGAGGAACGGCCTAGCCACGAGGATGCTCCAGGATTTCTGCAAGTCCATGCCCACAGAGAGGGTGCTGGGCATTAGCTATCCCATATCTCCCAGTATGTATGGAGTATGCAAGAAGTACCTAGAGATTCACCAGGAACAAAGAGAGCACCTCTATGAAGTGGAGGCTCCTGGGAATTGGAGTCAGAGACGCAATGTGTGGTTGAGCATACTACTCCAGCACCAGCCAACACACAGTACGATCTCAGATGAGAGTCCACACATCACACAAGCTACAGACAAACAGCTCACAGACACTAAAGGGAAGAAGAGCATGCCACGACTCGCAGGCACTGAACCACGCAGGCATCAGAGAAGATGTGTCGAGAAGCGACCAACTGACCAGGCTGGGACGCCACAGAAGtgtaaaaaaaccaaaatatcCTAGTAAATTCTGTTCTACTGAATGGGTCTAGATGTGGAAACCCTATGAAGAAGCTGTACTTTGTCACTGTTCTTTATACATCAGTCTCAGGGATTTGTAGTTGCAATACAACATAAAACCAAAACGTCTGTGATTGCAGAAGAATATAGAGACATTCACAAGGTCTTGAAAATGAATGCCGTGTTCACTGTAAGCATGATTAGCACTCATAACTGTGTTAGTGTGACACTGAATTTACTGGTTGAACAGTGtccaaaaatctaaattaaaaataaataaataataaacctttttttatttaaaaacctttGAGGTATTCAGTATTCCCTAATTCTAGTGTTCTAACGAAGACCAGTGCAGTGTGTACTGTTAGCTTCTATTAGCTTTTGAGTAAATCCTCTTTACACTTTATGtgaattttttcccccttgccTAATGTGGCACCAGGAAGGAAAAGACAGTCATCAGTTACTGAAATCGCAAGGTCATTTGTCAAGAAAAACAAAGTTCAAATTCCAATTCAAACAAAGCTACATCTGGATTTAATAGCAGGAATGGGAACTGCAGGTCACTGACAGGTGCATAGCCTTACAAAATACTGAACAACAATCAAATTTAAACTAATCTGTAACCATATTAGTTAGTTGTCAGCTAAAGCTTAATGtagctttttttctgttatagaAGTGTCATTTGGttgatggagaaaaaaataaaacatttgactttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117806 lncRNA upstream 9599 14630335 ~ 14631361 (+) True G99362
TU117693 lncRNA upstream 322306 14317597 ~ 14318654 (+) True G99276
TU117678 lncRNA upstream 378443 14261441 ~ 14262517 (+) True G99261
TU117677 lncRNA upstream 380218 14257912 ~ 14260742 (+) True G99260
TU117377 lncRNA upstream 650807 13989942 ~ 13990153 (+) True G99006
TU118021 lncRNA downstream 76651 14725618 ~ 14725938 (+) True G99516
TU118023 lncRNA downstream 81017 14729984 ~ 14730183 (+) True G99518
TU118233 lncRNA downstream 377520 15026487 ~ 15027086 (+) True G99704
TU118234 lncRNA downstream 406300 15055267 ~ 15058771 (+) True G99705
TU118304 lncRNA downstream 522365 15171332 ~ 15173435 (+) True G99766
XM_034305164.1 mRNA upstream 107702 14528876 ~ 14533258 (+) False pgpep1l
XM_026927336.2 mRNA upstream 107702 14530483 ~ 14533258 (+) True pgpep1l
XM_034305411.1 mRNA upstream 187884 14426532 ~ 14453076 (+) True cftr
XM_026926947.2 mRNA upstream 276155 14355893 ~ 14364805 (+) True bida
XM_026926948.2 mRNA upstream 276155 14355923 ~ 14364805 (+) False bida
XM_026927162.2 mRNA downstream 4948 14653915 ~ 14657137 (+) True arpin
XM_026927225.2 mRNA downstream 27577 14676544 ~ 14686478 (+) True kmt5b
XM_026927226.2 mRNA downstream 27577 14676544 ~ 14686478 (+) False kmt5b
XM_026927058.2 mRNA downstream 46810 14695777 ~ 14709427 (+) True chka
XM_034305422.1 mRNA downstream 135973 14784940 ~ 14877479 (+) True hydin
TU117779 other upstream 116480 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 600178 14035230 ~ 14040782 (+) False skor1b
TU117337 other upstream 851570 13785095 ~ 13789390 (+) False G98972
TU117309 other upstream 925194 13691607 ~ 13715766 (+) True G98946
XR_004578350.1 other upstream 1785407 12837299 ~ 12855553 (+) False nlrc5
XR_004578337.1 other downstream 651515 15300482 ~ 15345968 (+) False carmil2
TU118902 other downstream 1700490 16349457 ~ 16349787 (+) True G100306
TU118951 other downstream 1951290 16600257 ~ 16601067 (+) True G100345
XR_004578324.1 other downstream 2751459 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 2840579 17489546 ~ 17493092 (+) False LOC113539654

Expression Profile