RNA id: XM_034305102.1


Basic Information

Item Value
RNA id XM_034305102.1
length 2743
RNA type mRNA
GC content 0.49
exon number 20
gene id terb1
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30760185 ~ 30795802 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gctATTTCACGcgagctagctagttagcatcaATCCACTCAACGCTTTACATAGATGCTTTTAGAGTggttattataaatttatttaaatatagttaattgtgttttatactaataataattttaactcCCGTAGTTTATTTATTGGAATTTATGCTTAGGTTTGTGATAAAATTGGTGTGTTTTAGTTGTACTAACTTATAAAGAGCTTAAATAGCTAACTTAACTACATCTTAGTTACATCTAAAAGTGTTTAATAACTACACATAACAAGCCAAATTTCTATTCAAATGAGCATAATTAGCTAGCAGTTAGATTTAAATTGTGATTAAAACTGCTGTAACTTGAattgatttgtttgtattttgttttctgaagTAACAGCAGCGTCCACAATGTTAAACGCCATCAGGACTGATCTGCGCTTATTACTCGAGTGTCTGAAGTACCAGATGAAATGTCCGGCGTCTCAGAAACAAGCTCTACTCACCATCGTCTCAATCTGCCAACAGAACGCAGGTGAGAACGTGGAGTTCCTCAGAGAGATTGGAGGTGTGACGTTCATCTATAACCTGTCCAGAGCCAGCGATTACTCTGAGGTTAAAGAGACGGCTCTGTTCGCGCTCGGCTCTCTGGCTGAAGTTAACGAGAGCTGTAAGCAGAGCCTGTGCAGAGAGGAGATGTTCTGTGGCTTGGCCGACTGCATGGAACAGGAAGCGTCCCTCACGCTGAAGAGAGTGGCCGTGTACATGCTTTCTGTATTAGTTTCCAACAACAaaCAGGGACAGAGCCTTGCTAAGACTTCTAGGTGTATTGATATCCTGCTCAACTTGTTCAGGAGTACTTATCCCATGGCTGGAGGAACTATTGAGCTGCTGCAGCTGTGGACGTCAGTGTCCAGTGCTCTCTGTGGCTGTGTCAACAACCCCCAAAATGAGGAGAACCAGAGTGCGTGCATGTGTCTGTTGCCTCTGGTCAAGGTGTGGCTCCAGCAGGTATCCGTGTTCGGGGCGGAGCTGGCTCAACCCGTCTGCTCCTTCATCGGCATGACGGTGGCGAATAACCCGTTTGTTCAGGAGTATTTTGCGTCAGTTGGAGGACTGCTCACACTCTCAGATGCTTTATCCAGTGCAGTTACTCAGTGCAGAGAGAATCCTGCAGCCTGTAGTCTCGCTGCCATGATTACCAGAACACTGTCTGCCTGCATCACTGACAAcgAGGCTTTAGCACCTGTGCTGTCTGAGCTGACGTTGGTTCCAGACCTCCTGCTGTTGCTGTCCAGCCCAAACCTCAGTCCACGAGACCAGCTGGCCGTGGTGTTGACACTCGGGCGCTGCACCGACGCGTGTGTGGAGCATCAGTCTCAGCTGTTGCAGGGCGGAGGACTGCCTCTGATGATCTCTCTCCTGACTGAAGCGAATGATGAGGAAGTCAGAAAGGCAGCTACCTTTGTACTGCAAACATGTAAAAATCTCACTGGATCTACAGCAGGTCAGAGTGTGGAGTCTGAGCTGCAGAGACACCGTCAGTCCGCCTGGGAAATCCAGCagagaattcagcagctagAAAGACGgcagttgGACGATTTGGGAAAGGATGTAGAAAATTCTTCAGCTCAGCCCACAGAATGCAGAGAGGAATTGTGGGAAGACTCCGTGGTGCGAAGGTCCAGAGGTGGAAGCCGAGTGTATGAGGAGGAGTCGTGGAGAGAGGACATTCCACTGAACTTCACATCACCTACACAACCTCCACCTGAGCCAGTCTCAGCGCAGGGAATGGGAGAGCCAATGcagCATGTTCGAAGACAGATTGTTAAAGACTTTGATAAGTCAGTGAATCCTTTCCAAAAAGGAAACGGAGAACAACAGCGACTGGCAGAGAAGGCGACAGGAAGTAGTGTAGCAGAACAAAGTGAGCAACAAAtgagaagagagagtgagatgaaAAGAGGGATGGAAGAAATGGAGAGAGGTGAAACAGATGAAACAAACCTCAGCAGAGACAGAAGCAGAGATGAGCTGGGACATGAAAACCCTGTCAGCGCCACACACACCAAGCTACAGGCAAAAGACAGAGATGCACGCAGCCCAGATATTTTCAAACATCCTGCTCCCATGAAGAGAAGCCAGCAGACTCTGTTTCGCTCGGACGATGAGCTGTCTGTGTGCTCTGAGCTCCTGGATAGTGAGATTGAGAGGATTCTCATCACTCCAGCTGCGTGTAAGCCCAGCAGGCTACGCTGTGCAGGGTGTGTGAGCGGGGTGGATGAGGTGAACAGCAGGTCAGTGGGTGTGGTTCTGCGCGGCTGTAAGAGTCGGTGCGAGTTCCACATGGTGCTGCAGAGAGCTGAGGATCGTCTGAAGAGAAGCCTGCGTATCGATGGGGTCGCGCACACGCGCGGTCACGATCACACACGTGACTGTGGAGACAGAGACACGTGTTCTTCAGAAACAGTCTccaaacacacagtgagagaaagagagggtcGCGTAAACAGACCGAGCCGCAGAGACACTATGAGGTCGATAAATCTCACTCCTCTGAAGAGATCGGGTGAAACTCAGGGCAAGGTTCAGACGTGGAAAACAGACATGTGTCCAGTCTCCGAAAACCAGGGTGCGATGATGGAAAGCAGAGTTGAAACAGGATCAGGACAAAGAGAAGACGAGATCCAGCACATGACTCAAAACCACGGAATACTCTTACGgtcatcctgcaactctttctgagcgactctgtgtgtg

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127204 lncRNA upstream 30726 30728834 ~ 30729657 (+) True G107629
TU127154 lncRNA upstream 197482 30557623 ~ 30562901 (+) True G107591
TU126899 lncRNA upstream 262068 30394495 ~ 30498315 (+) False dnaja2b
XR_003402817.2 lncRNA downstream 32282 30828076 ~ 30829663 (+) True LOC113526871
TU127253 lncRNA downstream 32306 30828100 ~ 30829657 (+) False LOC113526871
TU127254 lncRNA downstream 52165 30847959 ~ 30848474 (+) True G107657
TU127256 lncRNA downstream 54747 30850541 ~ 30854105 (+) True G107658
TU127258 lncRNA downstream 58819 30854613 ~ 30859896 (+) False G107659
XM_026913943.2 mRNA upstream 21811 30733459 ~ 30738572 (+) True syt1b
XM_026913947.2 mRNA upstream 32428 30720852 ~ 30727955 (+) True si:dkey-30c15.17
XM_026913945.2 mRNA upstream 42237 30711776 ~ 30718146 (+) True glipr1b
XM_034305495.1 mRNA downstream 12344 30808138 ~ 30811975 (+) True arf5
XM_034305382.1 mRNA downstream 20753 30816547 ~ 30825966 (+) True LOC113526343
XM_034305000.1 mRNA downstream 179915 30975709 ~ 30985960 (+) True pgr
XM_026911260.2 mRNA downstream 180232 30976026 ~ 30985960 (+) False pgr
XR_004578358.1 other upstream 2598514 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2598514 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2598514 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2689698 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2798612 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile