RNA id: XM_034305148.1


Basic Information

Item Value
RNA id XM_034305148.1
length 6755
RNA type mRNA
GC content 0.39
exon number 8
gene id fam168a
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 22883271 ~ 22934025 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttgTGCGTTTCCATACCgcctgcaagaaaaaaaaaagcccagatCGTttggaggaaaaggaaaaacgaggagaaaagacagagcaaggccaagaaggaaagaaggagagaacaTTCAGAAGGGACTAATACACGGAAATCTGCCTCTATACCTTTCATATCAATTTGCATATCCATCCCTCCTTCATTTGCCTTTGCTTCAGTGAGAATGGCAGGCGGACCTCCCTCTGACAAATACACTTTTCTCTACCCGACAGACAGCAGCTTAAAGAGtaagaGCAGAGTATCCAGTATGAACCCTGTGTACAGTCCAGTGCAGCCCGGGACTCCATATGGAAACCCCAAAACCATGGCCTACACAGgtTACCCAGCAGGCTATCCTACTGCAGCGCCTGCCTACACACCAAGCCTCTATCAGACAGGCAGTCCAGGGTACCCTCCAgGATACACCGCAGGGACTCCATATAAAGTTTCCCCGTCTCAGTCAAACGGCGCTCCTCCACCATATTCCCCCTCTCCAAACACGTACCCCTCAGCCATGTACCCCATTCGCAGTGCCTACCCCCAACAGAACCTCTACACTCAGGGAGCCTACTACACCCAGCCTGTGTACGCTGCACAGCCCCACGTTATCCATCACACCACGGTGGTGCAGCCCAACAGCATCCCTTCTGCCCTGTACCCTGCCCCAGTGCCCCCTGTGACCCCCCGGCCCAGCGCACTCACCATGGGCATGGTGGCAGGAACCACGATGGCCATGTCTGCAGGAACGCTGTTGACCACACCCCAGCACACTCCCATTGGTCCACACCCTGTTACGGTGCCAACGTATCGTCCACAAGGAACGCCTGGCTACAGCTACGTGCCACCTCACTGGTAGAGCCCATCTGTCAATCATATCTGGAGTTAAACGTCGTATGCAAAATCCTCAAGTGTTACACGGGCTCTCTGTGATCAGCAGCCACGTCTGCcagaacagaagaaaaaagggtCACTTTATGCATTCTTACGTCATTTTGTAaaagctgctttttatttttttatttaattttttccctctattttttttttatttaatttcctctTGTGTTTTAGTCTTACTATTCCTGACCTatgttgttgcatttttttttttttttaaatcgacAATTTAAATTAACAATCAACTCCTGCAGAAACTCCAGAATGATTTTGACCAGTTACGACTTTGAAACAATGTGcttttttatgttgttattgttgttgttgttccatATTTCCACCCTTGAGTGGGAATGTACATTGCACCATGCTCATCATCATGTCTGTCATGCCAAATATTATAAGGTTTAGATAGTAGTGCagggtttttctttacatttgtgTAGATTTGTAATTTTCAGATTCCCTTTTCAGAAGGGCTGAGACGGGTTTCTGCTTTTCAGTTTTGATTTCACACAACTTTCTTCTGTTCATCTTTCTAGCATTGATAACAAGGGTGTCTTCCAGCTTGTagcagtttattaggtacatttGTAATAAGTTTAGCAGTGCGTAGGGCAGCTCGACATGGTTCAAACATCATTAGGATGTCGAGTGCTTACACTAATCTCAGTTATTCACTTAGTAGAGGACTctggtttctttatttattggaTCATCTGGATAGAGTAAGCTTCTAAATTATGGCGTGCATAATATATTTCTATAGATGCATGTGATGTGCAGAGATGTGCTCTTGCAAATACTTATTTTTGCAATTGCACATACACGCTGAAACACCTGCCAACACACAGTCTCTGTGGAGGCAAGTGATGTGAAAATGGCACTTAGGATGACGGATTGGGGTCAGATTTCATCTTAGTGCAGAATACGTGCCAAGACAGAGGACGTCTGGGTTCGACAGGGTCCTGATTTAATATTCAGGGTCTCCAAATTATGGTGGACGGTAAATATGaacaacattaacaaaccaaaaactgaacagaaaatcagcaaacacaacagcaaatcagaaatcTCATCAGCGTTACTTAAAGGGAAGGTCCTTCTTGAACATCACATGCATGTCGCTGGTCGGCTACAGCGCACATCATTCTGAGAGTCAGCAGAAAACAGAGAGCTGGATTTTTACAGTAAGAGGAAATACAAGAGTAAATGAATCTACTGATGCGTTTGTTCATACTTATTTTTACCAAGTGTTCTCATATGATATGCTGTCAACTTTAAAATGAGTAtgcaaatgcaataaataaataaataaatacatacatacatacatacatacatacataccttAGAGGAAGCCTGGTTGTTCAGAAGAAAGAATTACTCCTCACTATAGTAACTTAAGTAACTTTGCATTAAACAGTGTTTTCAGCAACAAGTTTGTGATGTTCAGTAATGATCTCCCCTTGATGTTTTGAGCTGATATTTATGTGGTTCTGAATTTGTTGTtgcgtttttgttttgttgatgtgTTTTGCATTTACCAAATGGATTTAAAGGAATTTGTATCATGCATTATTCAGCATTTTGAATAAAGCAGTAATGATGGCGGTAAGTAGTAGAATAACCCTGCGTTCACATTAAAAGGTGACAAATTATTAGCCCAGTTTTTGGCTTGTTGGCATGCACTCGACAGTTTTTTAGTGTTCCAGTAGAAAGTGTTTTTTATAGGATATTGTTAATCTGATACccatttgcttttttaaaaaatatataatttaatatcttCCTATTTCTATTGTTTTAAATGACACTCATTAACAAATTGTTAATATCAAACATTGACTATCCAACATTATAGAGAGTTGAGAAATTCATGTTTTGATTGTCACTGTGCCAGAATTGGAGAGCAGGGTCTGTATACTGGATGTAGACCAATGGGCAGGTCTTTAGgtgggacagatgggtgtgtcttttaGCCCATACAAGTCATCagaaatacaatttaattttcttttgtaGAAACTCAAATGTATAATCATAAATCTCAAAAGTAGTAAAAATTTCTCAGAGGATAACTGAGAGGATTTTATAatggctagctggctaacaaaGCCTGTGAGCATGCATGCGCATATGTGACTGCCAATGACCTCCATCTTCTGATATGAAGACCTTCATAAATGGACTCAATGACACACTCACATTCCCATTTATGGCCTTCAGAATTTCTGACCTCCGACTagaaaaaccaaacaaaatgacACATCAACATGGCTCTGCACACTCTCACCAGTAAATAAGGGACcgcttctctacttttaaatgcgATTACAGtcgtatttgctttagatcagtcaacatacagacataacTGTATCACACTGGCCATCCAGTGTTGTTTTGAGAAGGTACTGCAAATACATCATGAACATTAAAGTTATCACtgatgttagctggctagcttttCATTAGTTCATGAGGTTTtggacagagcaaacaaaatatgattttttccTCTGCCTTGTATCCCGAATGTGCGAAGGTCAAAAATGATATAATTCCTACTTCAGAGTTGAGTGGAACGCAGCAACACTCAAATCCACTCCCATTTTCatatatgatctcagtgacttgtcCACATTTTCATGGCCTTCAAGCCACTCATATTTCCTCATATGATCCCACTGCATGTCCGTATATGGACTCGAAGGTGCACCTTCCTTCGTGCAGGCAGTCCATGTTGAAATTGTAGTTGTGCGCTGCCACGGGAAATGACTGCTCGCTTTGTCACTtcctagtgtgaatgtagggtaaGAACAAGTAGGACATAGAAAAAAGGGCATAAAGATGGCTATTTGAGAAATCCCCTCGTCCTCTGTGAACACTCGGGCCCTGAGGCCTTGCTGCACGGATTTGAGAAGTATTTGttaaatgcaataataaaaacTGCCTCGATGTGTAACAGCATTGAAAGAGAGAATATTGTGAATCCTAGTCCCTTGTAATCTATGAACGCACTACAGTACATATCAGTTACTTTATGAAATAATATCAGCATATTGACACATAGATACATAATAATCAAATATACGGTACACACTATTTAATGATCTACTAAAGGAAGACAAGTATATACTATGGTACCCATTAGGCTTGATTAGGAATGTGCCGATATTCAGTTTCTGAATGACGATCTTTTAGGGCAGCCTATACAAATACTACCCTGCatattgtgtataaaaaaaactgtttcctGTATCTTCTCTTTGGcaagcatgtttttgtttttccatagaACAGAAGGACTTTCGTGGGAGAAAATTGATCTTATGGGGAGCGCACATGTTCTTAAATGGAAAACAGGGACACTGACGCTATCCTGAagcatgttttaaatttttttgctgCTTTCTGTTCTGAAGGCGTCTCCCACAGTAGTGAACTTGTGTCTTGTTTGGTAGCATTTTAAGGAAGTAAACCTGACAAACAAGAACAACATCTCAAACAAGCAGCAGCTGCTTTTCTGGTGATGAGTGCAACTAGATTATTGTTAGCAGATTGACATAGGTAGCTAACTAAGGCTAAACTGCAAATTAGCTGCATATGGTGGCTACATGAGCTTTGAGATCACTGTAAAACCACACAATGAGTTCTGACAACCTATGAACAGAAATACATGAAAGAAAGACATGAAAATTTGTAAACTTACCCCGCAGTCACAGAGACAGCTTGTTGAAACGTTCATGGAAATCTGGtctggtgaacagaattatgggattgcctACACCAAGAAAGGTGTATGCAGTGCTGGGCTCACGTTAAATCAAAGAAAAGGACAGGCTTCATGTCGGGAGTACGCAGATGCTGCCTACCTTGGTAGTCACGTTGCATGGAAATGCATTGATTATCTGTGTTGAATATTGTGGTTTATCATATTATCGATTATCGGCACATCCCTAGTCATGGAAGTAATATTATTCTCAgtaaacacatttatcatttaggCTACTCAACCACTACTTGAAATATATTAATCTGAATATGAAGACTCGCAGAGATTTTATGGAACATAATGACACAGGCGGATTTCAGCTCTTGAGCTCAGTTTTTAGCAGAGCCTTTGAGAAATATTCCTTTATCGtaaaggagagagtgagaggaagaaaacttgTGCAAGACTAAAACTGAACTACTTGATTGCAAAAATTCCACATTTTTCCTCATACACGTGTGGCAGCATAGGAAAACCCTTTACTTCAGAAGAATTCTCCagaatgcaatttttattttttttttttttttgagacagtATCCCAATCATAACTAAACATCTGCCATGTCAAGCGTGTTCACtggcaaaaatgtaaaaattaaaaaaaaaagtctttgttttgttgttggttAGCGCATTTAAACATTCCATAAGAGAGGATATTCTGTGCAAGTTAACGGTTGTCAATGCTAACCAGGTTGTTTCAGACTGAGGTTACTAGGAAGCAAATACATATatgacatttatataaataaatgtcatatatatatagggaTGTGGATGAGTATTCGAATGCCCGTGTATAAAGTACTTACATCTGTGTTTTCATTCAATGACGAAGTATATACTGCCTTGCACAAGTATTTAACCCCCTTGAATTTTACCCCATTTTGTAgtattacaacctggaattgaaatggatttaattgggaCTTTTAcaatttgatttacacaatatatcTAACATTTGAaggtacaaaatattttattgtgtcACAAAGGttgtgaaatgaaaatacagtTATTTGATGGTTGCAGAATTATTCACCCACTTGGTCagtacttggtagaaccacctttggTTGCAAATAGAGCAGCAGGTTTATTGGGGTGTGTTTTGATCAGTGTTTCCCAAATGGATTCTGATGTTCGTGccctttcttcttggcaaaattgaTTAAactctgtcagattggatgggACATTAAGGTTGAGGTCTGGGcttgactgggccattctaacacattcaggttcttaGTTCTGAACCATTCCACTGTAGTTTTGGCAGAAGGCTTAGgttcattgtcctgttggaggTTAAACCTCTGCCCCAGTCTCAAGTCTCTAGCATTTTCTTCTCgaattgccctgtatttggctcTATCCATTTTGCCCTTAATCTTGACCAGTTTTTCCTGCTTCAGTAGCATGGGCTCTTTTGTGTAGATGGCATATAATTACAAATGGGTGGGGGGgataaatacttatgcaaggtaatgtattacatgcattgCCACTGTGGTTGTATAAAGTTCATTCACCCAATCAGATTTCTAATCATCCTACCCACAAATGTCAAAGTGGTTGTAgccttttaaaatgaaaagtttgtgtttcattatttctctgTATAACGTCTGTCAATCACATGAACCCGTGTGCCACCACAGACAGGAAAAACAATTCATTGTAGTGAAAAATGATACTTGTTTGCACCATATTAAATCCGGTTTTCTCCATGTCCTTCCAGTTAAGCAAACAACGTATAGGTAATTATCCAGCCATTAGGTTTTCTGTTATCTTAGGTAGTCAAGTTGTCTGTTTATACTACCGTGATCTTACAAACAGTTGCTGAATGAGCCTTGCTAAGCTACAGGAGAGACGACAGGCAGATGCTAATGCTACTAACACTAGCTGACAGGTTTagatggtaaataaataaaaggcatTTGGTGAGGAATGTTTGCATATTATTTAAGCAAAGTCTTGgtaagatattaaaaaaaaaacaatctttgTTGTCATTATTTGGCTATTTGCCATTGAATAGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122262 lncRNA upstream 14011 22866740 ~ 22869283 (+) True G103297
TU122232 lncRNA upstream 190984 22692092 ~ 22692310 (+) True G103270
TU122206 lncRNA upstream 356558 22526375 ~ 22526736 (+) True G103246
TU122086 lncRNA upstream 712460 22128369 ~ 22170834 (+) True G103140
TU122075 lncRNA upstream 833912 22049174 ~ 22049382 (+) True G103130
TU122270 lncRNA downstream 8684 22942709 ~ 22983497 (+) False LOC113526422
TU122297 lncRNA downstream 66342 23000367 ~ 23006640 (+) True G103331
TU122293 lncRNA downstream 172117 23106142 ~ 23106241 (+) True G103327
TU122322 lncRNA downstream 206822 23140847 ~ 23148816 (+) False relt
TU122343 lncRNA downstream 241526 23175551 ~ 23259191 (+) False LOC113526573
XM_026914293.2 mRNA upstream 1070084 21762447 ~ 21813210 (+) True zbbx
XM_034304980.1 mRNA upstream 1149723 21689428 ~ 21733571 (+) True LOC113526346
XM_026913273.2 mRNA upstream 1200971 21664634 ~ 21682323 (+) False pdcd10a
XM_026913274.2 mRNA upstream 1200971 21664886 ~ 21682323 (+) True pdcd10a
XM_034305269.1 mRNA upstream 1264958 21590628 ~ 21618336 (+) False golim4a
XM_026913425.2 mRNA downstream 18556 22952581 ~ 22983599 (+) True LOC113526422
XM_026913424.2 mRNA downstream 18556 22952581 ~ 22983599 (+) False LOC113526422
XM_034304967.1 mRNA downstream 19350 22953375 ~ 22983599 (+) False LOC113526422
XM_026913426.2 mRNA downstream 40418 22974443 ~ 22983599 (+) False LOC113526422
XM_026913525.2 mRNA downstream 51384 22985409 ~ 23099891 (+) True LOC113526468
TU122021 other upstream 1088625 21787116 ~ 21794669 (+) False zbbx
XR_003402807.2 other upstream 1785453 21026027 ~ 21097841 (+) False LOC113526807
TU120293 other upstream 3759417 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 3762168 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 4089021 18793635 ~ 18794273 (+) True G101466
TU122269 other downstream 18652 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 229082 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 338033 23272058 ~ 23272208 (+) True LOC113527010
XR_003402831.1 other downstream 339283 23273308 ~ 23273458 (+) True LOC113527009
XR_003402830.2 other downstream 340334 23274359 ~ 23274509 (+) True LOC113527008

Expression Profile