RNA id: XM_034305152.1


Basic Information

Item Value
RNA id XM_034305152.1
length 8796
RNA type mRNA
GC content 0.54
exon number 52
gene id vwf
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30628412 ~ 30666725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATCACTCCTTCTCTTCttcacacagctctgtgctgaCGACCCTGAAGCGGTGAGAACCGGAGGCTGTAGGAGAACTCGAGTCTGAAACCAGGCAGGTGAAGAGGCTCAGGTGCTCGACACACGGTTCTCCTGAAGATGGAGACGCTTCTGTCGAGAGGATTTGCTGCACTTACAGGACTTTTCCTCTTACATTTAACAGggtgtgtgttagcGGAGGCGTCTGGTCGCTGCAGTGTGTTCGGTCGTCAGCACATACACACGTTTGATGGAGTGATTTATGCGTTTGCTGGTGATTGCAGCTACATGCTGGCTGGAGACTGTCAGAGCAGAACGTTCTCAATCCTGGgtgattTCTCAGAGGGCAAGAGGAAAGGAGTGAGCGTGTTCCTTGGTGAGGTCTTTGAGTTGCGTTTGTCTGTAGATGGCACTCTATCACAGCAAGGAGAGAGgctcaAGCTGCCCTACGCCTCTAACTCTGTGTTTGCGGGTTACGAGTTGGGCAGTGTGCGTTTGTGGAGCGATGAGTTCGGCTTCTCTGTGCGCATCGACCCGACTCACAACATCGAGATCACACTCAGCAAACAGCACCAGAACCGAACCTGCGGCCTGTGTGGGAACTTTAACTCCGCCCCCAGCGATGAGTACACAGCACAAGAAGgttttctgacagaGGACCCATATGACTTTGCCAATTCTTGGGCCCTTAATGGTGCGGCAAAAGTGTGTAAGCGCGTGAAACCACCGTCTCAGACCTGTAACACTACAAGAGACACAGAACAGttgatGTCGCAGTGTGAGGTTCTGCGCACCTCAGCAGTGTTCCTGCGCTGTAACCACCTGGTAAATGTAGATGCGTTCTTGGCGGTGTGTGAGTCGGATGTGTGTCACTGTGGAGAcggagaggagtgtgtgtgtcacgcCCTGCTGGAGTACGCACGCACCTGCGCCAGCCACGGACTCGTCCTGCACGGCTGGCATACACAGAGCCAGTGCActccAAAGTGTCCAATAGGAATGCAGTACACTGAATGCTCTCAGCCGTGTTCCACGTCATGTCAGAGCCTCAACATCCATGAACTCTGCAGGGACGAGTGTGTAGACGGCTGCACCTGCGCAGcgggTAAGGTGCTGGATCGAGAGCACTGTGTGGACGTTTCTCAGTGTTCATGTCAGCACACAGGAAAACGCTTTCCTCCTGGATCCACTGTCTCACAGGACTGCAACACatgTGTGTGTCGTCATGGATCGTGGGAGTGCACCAACGAGGAATGTCCAGgagtgtgtgtggttacagGACAATCCCACTTTAAGACCTTTGATGATAAATTCTTCACCTTCAGTGGAATCTGTCAGTATTTGTTGGCTAAAGACTGTCACAGCAGCTCCTTCTCCGTCCTCATAGACACCGTGCAGtgtgcagaTGACCCGGACGCCGTGTGCACACGTTCAGTGACCCTGAAGTTCCAGGATCTGGCCAATCAGACGATTAGATTGAAGCATGGGGGCGTGGTCTCTGTGGATGGCATCGATGTTCAAACTCCATTATTTAACggacgtCTGCGTGTCCAGAGCACAGTGCTATCATCAGTGAGGTTGAACTTTGGAGATGAGTTCCAGTTGGACTGGGATGGTCATGGACGTGTGCAGCTcaagttaagtCCAGCCTATGCAGGGAAAACGTGTGGTCTGTGTGGTAACTATAACGGTAACCAAGGAGACGACTTCCTGACGGTGGGCGGGCTGGTGGAGACGCGAGTGGAGGGTTTTGGGAACGCGTGGAAGATGAACTCTGAGTGTGACAACGTCCAGAAACAACCCACTGATCCCTGCAGCCTAAACCCGAagagagtgAACTTTGCAGAGGAGTCGTGTGCAGTGATGCTGTCGGTCCGCTTCGAAGCGTGTCATCACAAAGTGAACCCGAGTCCGTACGTGAAGAACTGCCGCTACGACGTGTGCTCCTGCGCAGACGGACACGAGTGCCTGTGTGCAGCCGTGAGCAGCTACGCAGCCGCATGCGCAGCCCAGGGAGTGCTGATCGACTGGAGGGGACAGGGGTACTGcgaGCTGACATGTCCAGGTGATCAGGTGTACGAGgtgtgtgggaatgtgtgtaATAAGACGTGTCGCTCTCTCTCCGTGCCGGacgtggagtgtgtgagtgtgtgtgacgaGGGCTGTTTCTGTCCTCGGGGTTTGTACCTGAGCGACACGGGCGAGTGTGTATCACCTGAACACTGCTCATGTCACTACGACGGCGAGATCTACCAACCCAGCGACATGTTCGCCGATCACAACTCCATCtgttACTGTGAGAACGGCTCCATGCGCTGCAGCTCCAGTGATCTCCCTCCCTCTGGGCTGTCAGACCTCTTCTTTGATGAACCTGCACCTTCTCGAGagcggCGGTCTCTCTCCTGTCCAGTACCGCTGGACAGGTTCGAGTGTGAGAGTTCGAGGGATGTGGGCATCGAATGTGCGAAAACATGCCAGAACTTAGATCTGGAGTGTGTGAGCCAGGGCTGTATCTCCGGCTGTATGTGTCCTGCTGGGAcgGTTCGTTACAGAAGAAACTGCATTCCTCCAGACCAGTGTCCGTGTTTCCATAACAACCACGCTTACGCTCCAGGACAGAGTATTAACATCGACTGCAACACCTGtgtgtgtgaaggccGGCAGTGGAAGTGCACTCAGCGAGTGTGTGACGGTGTGTGTCGGACTGTCGGAGAGTCGCACTACATCAGCTTTGATGGACTGAAATTCTCATTCCCAGGACGCTGTCAGTATATCCTCGCTCAGGATTACTGTAACGGTGTGGATGGAACATTCCGGGTGCTGGTGGAAAACTCGGCCTGTGGGGTCGTAGGTAACAGGTGCAGTAAGAGCATCAGCGTGTTTTACATGGGAGGACTGATCACCATGGAGAAAGGagagGTGAAGATGAGGAGGCCGGTGATGAAGGAGACGGAAGTTGAGATCGTACGTTCTGGACTTTATTACATCATTCTCCTTGGAAAACACATTTCTCTCACCTGGGACATGGGGACTCGCATTATACTGCAGATCAACAGTGTTTACAGGagcaaGGTTTGTGGTCTGTGTGGTAACTTTGATGGCAGTCAGAATAATGACCTGTTGAGCAGTAATAATCAGATGGAGGTGGATCCTGTAGATTTTGGAAACTCGTGGAAGGTTCGACCGAGCTGCGCCGACGCTGTTCAGgtgcccTCTGAGTGCAACACTGACATGGTGAAACTGGTGACAGTGGAGCAGTCGTGTCGTGTGCTCAGCAGCGCCCCCTTCAGGGAGTGTAACAGTGTGgtGGATTCTGAGCCATTCTGGGAGATCTGCACGTATGACACATGCTCGTGTTCGTCTGTCGGAGACTGCGCTTGTTTCTGTGACGCCGTGGCAGCCTACGCTCACGAGTGCGCTCAGAGGGGAGTGGTAGTGGAGTGGAGGTCCAACGATCTGTGCCCTCTGAGCTGTGAGGAGCTGAATAAGGACGCAGGTTTGGAGTGTGAGTGGCGCTTTAACGCCTGTGGAAAAGCCTGTCCTGTAACGTGCCAGCATCCAGAACCCTTAAACTGCCCCAGCAGCTGCGTCGAGGGCTGCCACGCCTCCTGCCCACCAGGTCAGGTCTTAGACGAGGTTCTGCAGCGCTGTGTGGATCCGTCTCAGTGTCAGGTGTGCATGCACGGCGGAGAACGAATTTCACATGGAAAGCAGATCATTCTCAATCACGATGACCCCCATCTCTGTCAGATATGTCACTGTGAGGAGAACACTTTGACGTGTGGTCCATGTCCTCTCTCTGGCCCCGCCTCCACACTGAGCCCTGTTACCAGTTTCACCACGCCCACGCCATTTCCCTTCTCCACACCGGTGCCGGAGGACGCCTGTGATCGAGCGATGGACCTGGCCTTCCTGGTGGACGGCTCTTCATCTCTCAGCGAGGAAGATTTCAGCTTGGTCAAGCTCTTCATCCTGGGTGTGGTGGAACGTTTCCGGATGGGCTCGGCACACACCCGGGCCACGGTGCTCCTCTTCCATTCTGGAGTGAAGAGCTACAATATGCAGGTGCAGAAGTGGATCTTCAAGAAAATGGTGCGTGATATGCACTACAGCGGCGGCGACGTTGCCTTTATGGACGAAGCCATCAAGTATCTGTCGGTTTATATTTACGACAAGAACAAGCGAGAACACGCGGGTCGTGTTGCTATTTTGTTGACGGCTAGTAAAAACCCCCGGCCCATGCGTGCTACTCAGCGCCTGCTGAAGAAGAAAGACATCACAGTTCTCAGCATTGCTCTGGGGCCTGACGTCAACATGGCGCAGATCAATGAAATTACAAAAGCCACGCCTAGTAGTCGGGCGTATGTTCTGAGCAGCGCAGCAGAGTTGGATACCCGAGCTTTGGATATTACCGATTACCTCTGCACCTTGGGGTTGGACCCTGAACCTCCAAAGAAACCAACCACCCAGAAACCCACAAAGACTTCTGCCACTAGCACCACCACCAGTCCTGTGGCAGTCCGTCTCAGCACAGTGCCTGCCACCGTTCCTCCAACCGCTGCCATTAtgactccatttcccagcatCCTCAGCCCTGGAACTACTTTTCCTCCTTCTACTGTGACCTTGCATGACATCATCATCCTGCTAGAGGGGTCAGATAGCGTTGGCGAAGATAGTTTCAATCGCACCCGAGATGCACTCGCTGATGTCCTGGCCTCATTTGAGCAGCAAGACGAGGAGAAATACCGCGTCACGGTGATGCAGTATTCCTTCACGGTTACCGTGGAGATCAGCCGAATGGAGCTGCTGCAACGGGAGCACCTCCTGCACAAACTGCAGCAGATCCGCTTCCGAGGTGGCGAGCAGATCAACACGGGCCACGCCATCCGCTCCGTCTACGAGTCCATCACCACCGAGGCACCAAGTCGCTCTCCAGACCAGATGGTGTTCCTCATAACCCAAAATCCACCCACTGATGTGATCCAGAGGCCACCAAACTCCACCCACACAAAGATATTCCCCATCGGGATCGGTCCTCGCGTGCGGGAGATGGATCTTGAGCTACTGAGTTTCCCTCACGCACCAATCATGTTGAATGATACAAAGCAGCTGATAAAACTGGGACCCCTGCTGGTCAACATCAGCAGGACAGTAAAAGGGCTGGTTAAGCCTGAGCTGCCACCCAGAGCGACGCTGCCCCCTTcagtgccCTGCTCCAAGCCTATGGATGTCCTATTTTTGCTCAGAGCCACTTCGGGTGATCAGTTTGAGGACCTGAAAACATTCGTTAAATCCTTTATAAGGAACAGTCATATCAgcCGTGACGGAACTCAGGTAGCGGTGGCGCTGTACGGAGAGAAACCCGTGGAGCCTGTGAGCTGGAGAGATGCACAGAACACAGAAAACCTTCTTCAGCTGGTGGATAAATTACATAGCAAAGCAGATAATTCACCAAAACTGGGTGCTGCATTACGATTGGCTGTTCAGAGCTCCATTTCCTCTGCAAGTGGGGCCCGGATGGGCGTGGCCAAGGTGGTGGTGATGCTGGTGACTGACAGGTCGATGGACTCGGTGCAGGAGCCTGCAAACGAGGCTCTTACTGCTGgTGTATCAGTTTTCCCCATCGGATTGGGCAGGCAGTACGATAGGAACGAGCTGATCATGCTCGCTggcccacacacacaagagaaCATCATAGAGCTGAGGAGCACTAACGACCTGCTCGCCATGGTAACGCTGGACCGATCGTTCACTGACAAACTCTGCagggCTGGTCctcctggagtgtgtgtggatgatgATGGAAAGGAGAGGAAGcctgGAGAGACGTGGCTGTTAGCAGATGGCTGTCACTCGTTGCTCTGTAACCCGTCTGGGGTCGTGACCCTGCAGAGCCACAGAGTGAACTGTGAGAGACTGGAGCCTCCGACCTGCAAAAACAACCTCCATGCTATAAAAGTGAACCAGACCTGCGGCTGTACCTGGGCCTGCCCctGTATGTGTATCGGCAGCTCCACCAGTCACGTGGTGTCGTTTGGGGGCGTGGCTCTGAAACTGAAAGGTTCCTGCTCCTATTCGCTGCTACGATCAGGAGGGGCGGAGCTAGTGCTTAACACGACCAAATGTCGGGACTCACCCAGTCAGATCTGCATGAAGAGCCTGGAACTGAGAGAAGGTGGAACTCGTGTGGTGCTGGGAGATGATATGAAGgtgACAGTAGACGGTGTGGTTACTCCAGTACCCTTCAGACGAGGAGGTGTAGCCGTCACTCAGATTGGAGCTCTGCTTCATCAGCTACGCTCGGAGAAGCACGGCTTCACCCTCAGCTTCACTCCACACAGCAACGAGTTCACCATCAGCCTCGatgtcaccatggcaaccagcacCACCGGCATCTGTgGTTCTTGCTCAGATGATCAGACAGACCTGCTGCTCCCTGACGGTTCCGTGAGCACGGACTCGGACGCGTTCCTGCGTGCCTGGGCTCTGGGCGAGTGTGTGGATAGTGAAACGGAGGAGTGTGAGGCGGGCGTGGCTCAGAGCTGCGAGCTGTTAGCCTCTGACGTGTTTAGCGAGTGCCATAATCTGGTTCCACCTCGGGATTTCGTGACCACGTGCAAGAAGGTGGCGTGTCACCCTGCCATGGTGTGTGACCTGCTCGCGtcctacagcagtgtgtgtcgACAGCAGGGCGTGTGTGTTCACTGGAGGACCCCTGAACTGTGccCCATGACTTGCTCTAAGAATATGGAATACGACGCGTGTCGTGTGgggtgtgtggagcagtgtggCCACGCCCGGTCCCCTCTGGGGGATGTGGATTGGAGGGGGGATGGAATAGGGGGCGGGGCTCAGTGTTGGACCACGCCCACCGAGGGCTGCTTCTGTCCTCCTGGTATGGTGCTGCGAGGGGACGACTGTGTTAGCCAAGAGGCCTGCAGTCAGTGTGTGGACCACCTTGGACAAGTCCACcagttcaTGGACAGCTGGACTCCGGATGATAACCcgtgtttgctgtgtttgtgtttagaccAGCAGCATATAAACTGTACATCTCTGCCATGCACTAACGCTAAAGCCCCTGTATGTGGAGCGTGTGAGAACCTGGTGGAGAAGAAGGAGTCAAAGTGCTGCCCCGAGTATGAATGCGtGTGTGACACTGCAAACTGTAAGCTCTCGGCTCCTCCACAATGTGGAAACGGTCTCACTTCAGTCCTGACAAACCCCGGAGAGTGTGCGCCCGTCTATCAGTGTGtctgTAGAAAAGACCAATGCTCTGCAACCAGGCCCTCATGTCCCGCCTACAAAAAGCTGTCCATCAAACAGACTGACTGCTGTGATTCCTTCGAATGCACGTGCAACTGTCAGAACTCCACCCGAGTTTGTCTTCCCGGTTACATCACCAAGGAGGCGACCAATGAATGCGGCTGTGTAGAGGTCACCTGCTTGCCTGATAAAgtgtgtgtggtggacaGTGTGGTGTATCAGAAGGGCAGTAGGTGGGAGGAGAAGTGTAAGACGTGTACGTGcacagagcagacagacagaatgaccGGGCTGCACATAGCGCAGTGTGTGGATCCCGTCTGCAACAAGATCTGTCCTCCGggTTCTACGTATTCTCATCCAGTGGGAGATTGCTGTGGTCGCTGTCGTAAGAACAGCTGTGTTGAGGAGGACACAAGACTCGGAGAGCGactgagacaggtgggagAGAGCTGGGTGTCTCTTGATAATCCGTGTGtgctgagtgagtgtgtgcaagTGAACGAGGAGGTCTTCATTCAGCACACGAATGTTTCCTGCCGCATCATGGACATGCCCGCCTGCCCACTGGGTACCGAACTGCACTGTAACACCGCTGACAGCTGCTGTCCGACCTGCCAATGcgtgcCTGTGGATGCCTGCGTGTtgaatcacacactcattggAgttggTGAGAGAGTGATGGTGGATGTGTGTACAAACTGTAAGTGTGTGATTGAGGGAGGAAAATATCACCTGGCCTGCAGGAAGATGAGCTGCTCACCATGTTCAGAGgGATATGCTCTTGAGCCTATACCTGGTGCCTGCTGTGGCCGTTGTGTAGCTTCATCCTGCACCATCCAGCGACCTGACGGACAGTTAATCAGCCTCCGggtgaaCACTACTCGTGAAGACGGCTGCACCAAACACACCTGCAGTGTGAATGAGAACGGAGAGCTGGTGCTGGAGACTGTAGTGACCACGTGTCCTCCCCTGGACCGAGCCAGCTGTCTGGAGCAcgggGGTCGAATCAGCCGGATCGGACAGAGCTGCTGTGAGATGTgtactGAGCCGGAGTGCAGGAGGAGAGTGGGTTTGTTGGATTATATCAGGATTGATGATTGTCAGTCGGAGGAGAAACTGGAGCTGAGTTACTGTGAGGGCCGGTGCAGCAGCAAGTCTGTGTATTCTGCAGAGAAGAACCATGTGGagaaccagtgtgtgtgttgctctgctACAGGAACCTTACCGCTGAGTGTTTCTCTACGCTGTCcaaatggcacacacacacaccaccaggTCCTCACTGTCACCGGCTGTGAGTGCGAGAGCCACGTCTGTCCTGCTgactgagaacacacacatacacacacacacacacgtataaaTACCCTGCAACCACTCATATGTACAACACCATCACTGTAACCCTATCTCACTCCTTatctcattaataaaaatacacataaaaagcAATAGATTTTACTCTCATGAATCAATATTTAATCAATAAACTCAATTTCTATCTACa

Function

GO:

id name namespace
GO:0007599 hemostasis biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K03900 VWF; von Willebrand factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127154 lncRNA upstream 65511 30557623 ~ 30562901 (+) True G107591
TU126897 lncRNA upstream 130097 30394495 ~ 30498315 (+) False dnaja2b
TU127204 lncRNA downstream 62109 30728834 ~ 30729657 (+) True G107629
XR_003402817.2 lncRNA downstream 161351 30828076 ~ 30829663 (+) True LOC113526871
TU127253 lncRNA downstream 161375 30828100 ~ 30829657 (+) False LOC113526871
TU127254 lncRNA downstream 181234 30847959 ~ 30848474 (+) True G107657
TU127256 lncRNA downstream 183816 30850541 ~ 30854105 (+) True G107658
XM_034305428.1 mRNA upstream 36272 30585783 ~ 30592140 (+) True si:dkey-88e18.2
XM_034305443.1 mRNA upstream 130116 30491642 ~ 30498296 (+) True dnaja2b
XM_034305529.1 mRNA upstream 201957 30410666 ~ 30426455 (+) True lmf2a
XM_034304988.1 mRNA upstream 219852 30365619 ~ 30408560 (+) True c2cd5
XM_034305560.1 mRNA downstream 1551 30668276 ~ 30687719 (+) True LOC113526339
XM_034305561.1 mRNA downstream 1551 30668276 ~ 30687719 (+) False LOC113526339
XM_034305022.1 mRNA downstream 23210 30689935 ~ 30699382 (+) True cers3b
XM_026913944.2 mRNA downstream 45048 30711773 ~ 30717743 (+) False glipr1b
XM_026913945.2 mRNA downstream 45051 30711776 ~ 30718146 (+) True glipr1b
XR_004578358.1 other upstream 2466543 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2466543 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2466543 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2557727 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2666641 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile