RNA id: XM_034305174.1


Basic Information

Item Value
RNA id XM_034305174.1
length 1013
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC117597544
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30378703 ~ 30379745 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTACCCCGGGATCAGCCCGCTACTTCATGCTCTCTACAGAACTGCTGCAGATCAGCTCAGCCGAGAGAACATGCAACGTATCAGCCTGCTGTAGAACAGCCCGTTGGAGATGAGATCAGCTATTAGAGATCAACCCTCTAGAGATCTGCCCATTGGAGATCAGGCCACTAGAGAGCAGCCTGTTAGAGATCAGCCTGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCATTGGAGATCAGGCCACTAGAGAGCAGCCTGTTAGAGATCAGCCTGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCATTGGAGATCAGTCTGTTGGAGATCAGGTTGCTAGAGATCAGCCCATTGGAGATCAGCCCGTTGGAGATCAGCCGCTAGAGATCAGCCCGTTAGAGATCAGCCCGTTGGAGATCAGGCCGCTAGAGATCAGCCCGTTGGAGATCAGGCCGCTAGAGATCAGCCCGTTGGAGATCAGGCCGCTAGAGATCAGCCCGTTGGAGATCAGGCCGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCGTTGGAGATCAGCCCGTTGGAGATCAGCCCGTTGGAGATCAGTCCGTTGGAGATCAGGCCACTAGAGATCAGCTTTTGAAGATTAGCTTGCTAGAGATCAGCTCACTAGATCAGCTTCTGGAGATCAGTCTATTAAAGATCAGCTCTGTGGAGTTTAGGAGTTGGAGATCAGCCCAGCTGAGAGATTAGATTAGAGAGATTAGACTGCCGATGATGTAACAGTTCATCATTTTCACGGAGAGCGAGTGGTAGCGTGCTTCCCCTCCATCTCTTTcagtttgctgttgtgtttcgaTTGTGTTaatcatgtttgtgtttatttattttattttttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126906 lncRNA upstream 22154 30264964 ~ 30356549 (+) True G107381
TU126737 lncRNA upstream 314265 29971482 ~ 30064438 (+) True G107223
TU126736 lncRNA upstream 407610 29970878 ~ 29971093 (+) True G107222
TU126730 lncRNA upstream 455631 29922752 ~ 29923072 (+) True G107216
TU126633 lncRNA upstream 688887 29685374 ~ 29689816 (+) True G107140
TU126894 lncRNA downstream 14515 30394260 ~ 30498315 (+) False dnaja2b
TU126896 lncRNA downstream 14515 30394260 ~ 30498315 (+) False dnaja2b
TU126898 lncRNA downstream 14515 30394260 ~ 30498315 (+) False dnaja2b
TU126897 lncRNA downstream 14750 30394495 ~ 30498315 (+) False dnaja2b
TU126899 lncRNA downstream 14750 30394495 ~ 30498315 (+) False dnaja2b
XM_034304987.1 mRNA upstream 25215 30311233 ~ 30353488 (+) True b4galnt3b
XM_034305470.1 mRNA upstream 72909 30304632 ~ 30305794 (+) True LOC117597588
XM_034304956.1 mRNA upstream 93169 30272544 ~ 30285534 (+) True cd151l
XM_034304955.1 mRNA upstream 93169 30272544 ~ 30285534 (+) False cd151l
XM_026914447.2 mRNA upstream 113142 30258068 ~ 30265561 (+) True taldo1
XM_034305529.1 mRNA downstream 30921 30410666 ~ 30426455 (+) True lmf2a
XM_034305443.1 mRNA downstream 111897 30491642 ~ 30498296 (+) True dnaja2b
XM_034305428.1 mRNA downstream 206038 30585783 ~ 30592140 (+) True si:dkey-88e18.2
XM_034305152.1 mRNA downstream 248667 30628412 ~ 30666725 (+) True vwf
XM_034305153.1 mRNA downstream 248667 30628412 ~ 30657541 (+) False vwf
XR_004578358.1 other upstream 2216834 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2216834 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2216834 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2308018 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2416932 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile