RNA id: XM_034305184.1


Basic Information

Item Value
RNA id XM_034305184.1
length 2073
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC117597546
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17400426 ~ 17443468 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATCTTCCAGGCTTTGACTACCACAGAAATATTGAATCCACAGGTTTGCATTTGAGTCCGAGGATTACCTCAATTTAAAACTATGCCACACACACTATCTCATGTGTGGATACATTTCACCTCAGCCAGTGTGGAAGGAAAGGCTGCGTACAGTTGCAAATACTGTGTAAAGCCATATGTTAAGAATGCCACAAAGATGCAACAGCATTTAGCCAAGTGCCCAAAGTTTTCCTAGGGCTCAAAACAAGCAACCACGGCCAAGCGTTCATCTGCTTCCATTCTAAGTGAaaatgattcagattcagacaCCCTCTCTTTAGCTCCTGATCACTCTGGAATCAGAGGATTTTTTGACTCAATGGATGAACGTAGCCAGAGAAATGCTGATGAATGTTACTCGAGCAATGTATGCAACTGGCTCACCTCTGATGCTCACAGCCAATGCTTTATCTAATCATTTGCTGGATAGAGAGTTCCACAGAGTGCAAGCAAAGGTCAAGCAAACCATTGACAAAGCAGACTGCATTTCAATCATCTCTGATGGGTGGCCGTATGTCCGGGGACAAGGAATTATCAACTACATTGTCACCACCCCACAACCAGTATTCTATAAGAGCACAGACACAAAAGGacaacagacacacaggccCCTACATTGCTGATGAGCTGAAAGCAGTCATCAATGACCTTGGACCTGAGAAGGTTTTTGCACTTGTAACTGACAATGCTGCGAATATGAAGGTTGCCTGGGCACACGTGGAGGAGACCTACCCACACATAACATCAATTGGCTGTGCTGCTCATGCTCTTAATCTTCTACTTAAGGACATCATGACACTGAATACAATGAACACACTGTACAAGACAGCGAAGCAAGTAGTGAAATATGTGAAGGGCAAACAGGTAGCTTCAGCAATCTACCTCTctaagcaaaaagaaaaaaacaagaacaccACACTGAAGCTCCCCAGCATCACTCGATGGGGTGGGGTTGTCATCATGTATGACAGTCTGCTAGAGGGGAAGGAGTCTTTGCAAGAGATGGCCATATCCCAGACTGCAGCCATTGAAAGTGCCATCAAGAGAATCCTGTTGGATGATGTGTTCTGGGAAAGAGTGACTAGCAGCCTGAGAATCCTCAAACCAATAGCAGCAGCTATTGCCAAGATAGAAGGTGAAAATGCAGTCTTGTCAGATGTTAAATGTCTCTTTGCTGACCTCAGAGAAGAAAATACAAACTGTCCTGCCCACTTCCCTGTTGCTGCAAGCAAAGGAAACTGCAGTGGTCAAATTGATGGGGAAGTGCCAAGAGTTCTGCATGAAGCCAGTACACGCAGCAGCATACATGCTGGACCCAAAGTATGAGAAAAGCATACTCTCTGTTGAAGAGATCAGCAGTGCTTACAGTGTTATTACTGCCATGTCTCACCATCTGGGTCTTGATGAAAGCAAAGTTCTTGGCAGTCTGGCAAAGTACCGCACCAAGCAAGGCCTTTGGGAATGGGATGGGATATGGCAGTCGTGCCAGCACATATCTGCATGTACCTGGTGGAAAGGACTTTGTGGATCTGAGGCTCTTGCACCTGTAGCCCTTTATGATCCTTCAAATCCCACCAACATCAGCCGCCTCTGAGCGCAACTGGTCACTGATTGggaacacatacacaaaggTTCGCAACAGGCTCACGAATGCAAGGGTTGAAAAACTGGTGGTCATCTGGGCAAACTTACGGCTCTTTGAGCCTGACATAGAGCCATCCTCAACAAGGCTGGACAGTGACACCGAAGGTGAAGATGAGTCAGGTGTCGAGGAAGCGGATATGGAGGATGTTGATGAGGTCCAAGAAGAGGCCATTGAGACCTGAATGGATTGAGAGGAAAAATGCAGAATCCAGAGACTTCAGAGAAGCTTGAGAGAAAATGCTtggattttacattttgaatggGACTTTTTTTTGGAAGGGAAAGGATGCTTTCATTATACAGCATTCATTaggaaatatgtttattaattcaGCATTTATGCTTTTGTGTTGCACaatgaaaaaattaaagttCCACTTATAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119180 lncRNA upstream 224056 17176158 ~ 17176370 (+) True G100544
TU119168 lncRNA upstream 245455 17154706 ~ 17154971 (+) True G100533
TU119167 lncRNA upstream 248194 17150953 ~ 17152232 (+) True G100532
TU119127 lncRNA upstream 309720 17087954 ~ 17090706 (+) True G100495
XR_004578316.1 lncRNA upstream 361150 17038051 ~ 17039276 (+) True LOC117597540
TU119380 lncRNA downstream 86758 17490146 ~ 17493002 (+) False LOC113539654
TU119517 lncRNA downstream 587014 17990402 ~ 18068569 (+) True G100846
TU119860 lncRNA downstream 801704 18205092 ~ 18205814 (+) True G101183
XR_004578365.1 lncRNA downstream 858335 18261723 ~ 18277820 (+) True LOC117597602
TU119876 lncRNA downstream 858353 18261741 ~ 18277823 (+) False LOC117597602
XM_026935421.2 mRNA upstream 22086 17363125 ~ 17378340 (+) False slc28a1
XM_026935420.2 mRNA upstream 22086 17363188 ~ 17378340 (+) True slc28a1
XM_026935370.2 mRNA upstream 334607 17041369 ~ 17065819 (+) False blm
XM_026935606.2 mRNA downstream 87481 17490869 ~ 17493092 (+) True LOC113539654
XM_026935550.2 mRNA downstream 127046 17530434 ~ 17541653 (+) True sec11a
XM_026935202.2 mRNA downstream 178495 17581883 ~ 17602174 (+) True kti12
XM_026932717.2 mRNA downstream 358129 17761517 ~ 18188484 (+) True reln
XM_026932718.2 mRNA downstream 358129 17761517 ~ 18188484 (+) False reln
TU118951 other upstream 799359 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 1050639 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 2054458 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2875946 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 3359644 14035230 ~ 14040782 (+) False skor1b
XR_003403945.2 other downstream 86158 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 1144537 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1148058 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1195326 18598714 ~ 18599375 (+) True G101419
TU120119 other downstream 1334955 18738343 ~ 18739998 (+) True G101434

Expression Profile