Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578324.1 |
| length | 907 |
| RNA type | misc_RNA |
| GC content | 0.42 |
| exon number | 5 |
| gene id | LOC117597546 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 17400426 ~ 17443468 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU119180 | lncRNA | upstream | 224056 | 17176158 ~ 17176370 (+) | True | G100544 |
| TU119168 | lncRNA | upstream | 245455 | 17154706 ~ 17154971 (+) | True | G100533 |
| TU119167 | lncRNA | upstream | 248194 | 17150953 ~ 17152232 (+) | True | G100532 |
| TU119127 | lncRNA | upstream | 309720 | 17087954 ~ 17090706 (+) | True | G100495 |
| XR_004578316.1 | lncRNA | upstream | 361150 | 17038051 ~ 17039276 (+) | True | LOC117597540 |
| TU119380 | lncRNA | downstream | 46678 | 17490146 ~ 17493002 (+) | False | LOC113539654 |
| TU119517 | lncRNA | downstream | 546934 | 17990402 ~ 18068569 (+) | True | G100846 |
| TU119860 | lncRNA | downstream | 761624 | 18205092 ~ 18205814 (+) | True | G101183 |
| XR_004578365.1 | lncRNA | downstream | 818255 | 18261723 ~ 18277820 (+) | True | LOC117597602 |
| TU119876 | lncRNA | downstream | 818273 | 18261741 ~ 18277823 (+) | False | LOC117597602 |
| XM_026935421.2 | mRNA | upstream | 22086 | 17363125 ~ 17378340 (+) | False | slc28a1 |
| XM_026935420.2 | mRNA | upstream | 22086 | 17363188 ~ 17378340 (+) | True | slc28a1 |
| XM_026935369.2 | mRNA | upstream | 334607 | 17041357 ~ 17065819 (+) | True | blm |
| XM_026935368.2 | mRNA | upstream | 334607 | 17041360 ~ 17065819 (+) | False | blm |
| XM_026935366.2 | mRNA | upstream | 334607 | 17041369 ~ 17065819 (+) | False | blm |
| XM_026935606.2 | mRNA | downstream | 47401 | 17490869 ~ 17493092 (+) | True | LOC113539654 |
| XM_026935550.2 | mRNA | downstream | 86966 | 17530434 ~ 17541653 (+) | True | sec11a |
| XM_026935202.2 | mRNA | downstream | 138415 | 17581883 ~ 17602174 (+) | True | kti12 |
| XM_026932717.2 | mRNA | downstream | 318049 | 17761517 ~ 18188484 (+) | True | reln |
| XM_026932718.2 | mRNA | downstream | 318049 | 17761517 ~ 18188484 (+) | False | reln |
| TU118951 | other | upstream | 799359 | 16600257 ~ 16601067 (+) | True | G100345 |
| TU118902 | other | upstream | 1050639 | 16349457 ~ 16349787 (+) | True | G100306 |
| XR_004578337.1 | other | upstream | 2054458 | 15300482 ~ 15345968 (+) | False | carmil2 |
| TU117779 | other | upstream | 2875946 | 14520801 ~ 14524480 (+) | True | G99341 |
| XR_004578308.1 | other | upstream | 3359644 | 14035230 ~ 14040782 (+) | False | skor1b |
| XR_003403945.2 | other | downstream | 46078 | 17489546 ~ 17493092 (+) | False | LOC113539654 |
| XR_004578373.1 | other | downstream | 1104457 | 18547925 ~ 18548289 (+) | True | LOC117597608 |
| TU120088 | other | downstream | 1107978 | 18551446 ~ 18551724 (+) | True | G101403 |
| TU120104 | other | downstream | 1155246 | 18598714 ~ 18599375 (+) | True | G101419 |
| TU120119 | other | downstream | 1294875 | 18738343 ~ 18739998 (+) | True | G101434 |
