RNA id: XM_034305270.1


Basic Information

Item Value
RNA id XM_034305270.1
length 3360
RNA type mRNA
GC content 0.43
exon number 15
gene id golim4a
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21590626 ~ 21618336 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGGTCCGCTACAGCTCGGTGACACGTAACTAAAGCTAAAGGTGGCGTGCTTGTTTATGTTTCATGGAGTTCACATCTGTAGAAAAGTTAGCAAAAAAACTAGCTTAGGactagttttgtttgtttgttagtagAAAAACCTCTTTTTGGAATCTTTTGTTGACTTTttgcaactttttaaaaaaaaaaaaaaaaaaaaaaagtaaacagagCTGCATGGGAAACTTTTCCTCCATCCTGGGAATGGATGTTCCACACCCGAGGATCTGCCTCCATCTGACCTGCAGAGTCCTGCTTTAAATGCCCAGGAATGTTCAGCAGATAAGAGGGAAAGTTTTGGACAAAGTTGTTGTATATGTTCATTGTGGAGAACATGGGCAGTGGGGTTTGCTCCAGAAAGCAAAGGAAAATCTTCCAGTCTTTGCTTCTCACCACTGTGGTTTTTGTCCTCATTTATGGAGGAATGATTTGGTATGAAATGCACCAGGAGCTGAAGAGGACAGAAGCTCTGGCTCTGAAATACCAGCAGCACCAGGAGTCTCTCTCAGCCCAACTCCAAGTGGTGTATGAGCATAGGTCCAGGCTGGAGAAATCTCTACAGAAAGAGCGGCAAGAGCACAAAAAGTCCAAGGAAGattatCTGGTTTATAAACTGGAGGCTCAGCAGTCACTGAATAAGGAGAAGCAAGATGCCAGCAGCAGGTTTAACTCTCTACATGCACAGCATCAGATCCTGAAGAATCAGCATGAGGAGCTGAAGAAGCAGTTCTATGAGCTGCAGGAGCAGCATCACGCTCAGAATGAAGACCACAGTAAGGTCGTGGATGGACACCAGCAGAGATATGAGCGATTACAGCAGACTAAAGAGATTGAGATCTCTAAACTCAAAGAAAATGTTTATAACCTGCGGGAGGAGAACAGGCAGCTGAGGAAGGCTCATCAGGAGATCCATGTGCAGCTTCAGGATACAAGGGTCCAGGTGGATGAGTATAAGCAGCTGAAAGAGACTCTGAATAAAATGCCAAGTCTGAAGAAGCCTGAAGAACCTCAACCTGCTGTGGCTCAGAACAGACAAGCAGAGGAGCACAAGAATACAGAGCAGGGGCAGAAACAAGATGAGGGAAGGGTGGAAGGAGCACAGGAACAAGAGAGGAGGCATGAAGTCATGGATCAGCCTCAGACAACAGAACAGCGTGATCAGCTTCACCatgaagacgaagaagaagaagggaaagAACCAGAACAAAACCTGCCTGATGAAAATGCATTAGAGAGGGAGAGTCACATTGCACAGCCGGTGAGTATTACTCAGGGAAACCACATCAAATCTGCCTACGAGCAGCAGCAGGACGAGCAGCGGCGTTTAGCTGCTCAGTTGGAGGAGGAACAGCACCAGCTGCTTCAGAGACAGGAAGAACTacggagagagagggaggagagagaacgaatggagagagagagagaggggaaagaaCTGCTGGCAAGGGAAATGGAGGAGAAAGAACGgctggagagggagagggaggagagagaacagatagaaagagagcaGGAGGAGAGAAGGCAGCgagcagagcagcagcagcacagagaacTCCATGAACAGCAGCTCCAGGAGGAACAGCTCAGGAAAAAACCGCCGAATGTAAATATGGAGCCTGGCGCTGTCCATCATGATGTAGataatAATGTTCACCATGAGGAGGCGCGGGGGCAAGAGGAACACAAGCAGGTGCGTCATGAAGAGCAGACCCTGGAGGCGGACATCGATCCAGCAGACGATCCCAACAATCAAGGAGAGGACGAGTTTGAGGAAGCTGAGCAGCAGGTccatgaggaagaggaggaagaagagccGGTGCCTGCTGGACACGCTGATACACACTTAATCAAAGACAATCAGCAGCATGCTCCTGCTGATGAACAGCTGGTGatgGCAGGAAACCCGGACCAGCAGGAAGACAATTTGGAGGAGCAATATCAGGAAGAGGGAGAAGATGAgGCTCAGGAAGATTTGGCTGTGGAGCAGAAACAGgaaggaagaggagaagaagacgCAGATCCTTACAATGAAGAGAACGGAGAACAGgatgacgCTAGAGAGCAGGAGGACACGGGACCTGAGAAACAGCCTGCCAAAGAACCTAATGAGGAGGAGAACtatgaagaggaagaggaggagccaGAAGAAGAGGCCAATCACAGGGCAGAGATGTGAGCCTTTTCTTTGTGTCCTTTCGTTACTGTAGCAGGATTAAACTGTGTGAAGCAGCAATTCCACTGGAACGATCATCATCTTTTGCGATAAGACACCCTTGAGCTGGACATGCTTAGACTGATCAAAATCTGCTGATCTggttaaatatatttctgttcaCTGTGCCtttattttgctaatttgtAAATGGAGCACTGTTTAATGAGAAACCTGATCGTTCTGATTTTAGAGCAACGCTATAGACAGAATGTTTATGATCAGagtgccatttttaaaaaaattgaaaatatttaatgtttaccTTTATATATGTaacttttcttctgtctttttttaagctTGTTACTGTATATGGCTGGATGTTTTTGAAAATGGACAGTGCTTTATAAGAATACGATTAGTGTCACtacatgaatgaatgtttattatttgttggAAGATGGATGTTGCTAATgaccatatttttattttatctttataagtgttgaataattttttgcagtgcatacacacaaagaaaatattttaagctACTACAAAATAACTAGAGCAACCTGGATCTGAGGTATTAGAAATTTGGCTTTTGTGTCATATTTGAATGTCGTGTTTCTGgtggtttttctttcttattatttcACATGGTGTTGTATGTCGGATTTGGCTATCATATTGAACATTTAGTACAGTTACTGTGCATTTAGCACCGTCAAGTCTCTACTTGGGAACAAGCCCTCATAAGTCTCGGATAGAAATGAAAAAGCTAAACGTCATGCTGTGTTAATTGTGCAGTTTAAACCCTCAGGCCCTGATTTATGAACATCCTGAATAACGCCTGCTAATTTTTGCGTGTTCTGTACATAAAGTGCGTGTATGTTTGAATGAAAACCTTTTGACAGTCTCTGTGAAAATGAAGGTGCCAATGgagatgtgaatgtgtggcgaaaaaaaaaaatgtgatatgaaACTTTACTGCAGtaatatttagtcatttttttaaaatctttttttgggATACTGAAGCAtgatatttctcattattaacctagtttaaaaaaaaaaaaaagtctagtaACTGGTATGGAAATGGATGGAATTTTGCAAATATAATGCTCGGCTGTAATAATGTGCGCATGCAATCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121821 lncRNA upstream 85005 21504744 ~ 21505622 (+) True G102903
TU121596 lncRNA upstream 396223 21149084 ~ 21194404 (+) True G102703
TU121459 lncRNA upstream 585906 21004336 ~ 21004721 (+) True G102585
TU121214 lncRNA upstream 639636 20939413 ~ 20950991 (+) False prx
TU121238 lncRNA upstream 656533 20930187 ~ 20934094 (+) True G102415
TU122075 lncRNA downstream 430838 22049174 ~ 22049382 (+) True G103130
TU122086 lncRNA downstream 510033 22128369 ~ 22170834 (+) True G103140
TU122206 lncRNA downstream 908039 22526375 ~ 22526736 (+) True G103246
TU122232 lncRNA downstream 1073756 22692092 ~ 22692310 (+) True G103270
TU122262 lncRNA downstream 1248404 22866740 ~ 22869283 (+) True G103297
XM_026913755.2 mRNA upstream 127195 21340396 ~ 21463432 (+) False LOC113526575
XM_026913756.2 mRNA upstream 127195 21340401 ~ 21463432 (+) True LOC113526575
XM_026913754.2 mRNA upstream 127195 21340401 ~ 21463432 (+) False LOC113526575
XM_034305497.1 mRNA upstream 127195 21340401 ~ 21463432 (+) False LOC113526575
XM_026913717.2 mRNA upstream 265360 21318185 ~ 21325267 (+) True LOC113526557
XM_026913273.2 mRNA downstream 46298 21664634 ~ 21682323 (+) False pdcd10a
XM_026913274.2 mRNA downstream 46550 21664886 ~ 21682323 (+) True pdcd10a
XM_034304980.1 mRNA downstream 71092 21689428 ~ 21733571 (+) True LOC113526346
XM_026914293.2 mRNA downstream 144111 21762447 ~ 21813210 (+) True zbbx
XM_034305146.1 mRNA downstream 1264935 22883271 ~ 22934025 (+) False fam168a
XR_003402807.2 other upstream 492786 21026027 ~ 21097841 (+) False LOC113526807
TU120293 other upstream 2466750 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 2469501 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 2796354 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 2850629 18738343 ~ 18739998 (+) True G101434
TU122021 other downstream 168780 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 1334341 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 1544771 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 1653722 23272058 ~ 23272208 (+) True LOC113527010
XR_003402831.1 other downstream 1654972 23273308 ~ 23273458 (+) True LOC113527009

Expression Profile