RNA id: XM_034305369.1


Basic Information

Item Value
RNA id XM_034305369.1
length 504
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC113534692
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16259445 ~ 16260173 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgagcagatcctttctttctccaaactttGGCTTTTCCATCACTTCGGTGGAGGCCGTTGATATGCCTGCTGTTGACTTGACTGACTTGACTGATTTCACTGTGTCCTATGCGATAACTGAACCTAGTATCTATCCTGCTGTGGAGCCTTTGGATTCCACCTCCCATATCATGGATGCCACCATTGTACAAAGCGAGCACTACGAAGAGGCCCGTGTTGTACAGAACATCCTTTTGGACATCCTTCAGGAAATTATTGCTTTCATGGGTATGGATGAATTATCTGAGGAGGATAAGCTGACTGTCACTTGTACCCATATGATTCAGATTCCGGCTCATTTCTTCACTGGACACTTGGGCAAGTTGGTACCCCTTAAGAATACAATTAAAGAATTCATGTGCATGCTTGCACAAGAGTATGATGAATTTCCTGAGCAGACATTCTACATGGTGGGTCCCACTGAAGTTCAGAAGACAGAGATCCTGTCTGAGGAACATTCATAA

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0016020 membrane cellular_component
GO:0016817 hydrolase activity, acting on acid anhydrides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118892 lncRNA upstream 51031 16208165 ~ 16208414 (+) True G100296
TU118888 lncRNA upstream 57375 16201861 ~ 16202070 (+) True G100292
TU118881 lncRNA upstream 61612 16197618 ~ 16197833 (+) True G100285
TU118823 lncRNA upstream 74126 16180040 ~ 16185319 (+) True G100229
TU118777 lncRNA upstream 174499 16082079 ~ 16084946 (+) True LOC113534481
TU118897 lncRNA downstream 58100 16318273 ~ 16318723 (+) True G100301
TU118946 lncRNA downstream 323448 16583621 ~ 16583947 (+) True G100340
TU118947 lncRNA downstream 324171 16584344 ~ 16584820 (+) True G100341
TU118961 lncRNA downstream 409214 16669387 ~ 16670025 (+) True G100355
TU118934 lncRNA downstream 419797 16679970 ~ 16680793 (+) False rgma
XM_026927790.2 mRNA upstream 403333 15812514 ~ 15856112 (+) True mctp2a
XM_034305539.1 mRNA upstream 450329 15723423 ~ 15809116 (+) False mef2aa
XM_034305541.1 mRNA upstream 450329 15723423 ~ 15809116 (+) False mef2aa
XM_034305538.1 mRNA upstream 450329 15723423 ~ 15809116 (+) True mef2aa
XM_034305540.1 mRNA upstream 450329 15723423 ~ 15809116 (+) False mef2aa
XM_034305372.1 mRNA downstream 240587 16500760 ~ 16510979 (+) True LOC113534621
XM_026927763.2 mRNA downstream 397428 16657601 ~ 16680535 (+) True rgma
XM_026927242.2 mRNA downstream 504522 16764695 ~ 16816272 (+) True slco3a1
XM_026927243.2 mRNA downstream 504522 16764695 ~ 16814449 (+) False slco3a1
XM_034305391.1 mRNA downstream 578702 16838875 ~ 16928642 (+) True srpra
XR_004578337.1 other upstream 913477 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 1734965 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 2218663 14035230 ~ 14040782 (+) False skor1b
TU117337 other upstream 2470055 13785095 ~ 13789390 (+) False G98972
TU117309 other upstream 2543679 13691607 ~ 13715766 (+) True G98946
TU118902 other downstream 89284 16349457 ~ 16349787 (+) True G100306
TU118951 other downstream 340084 16600257 ~ 16601067 (+) True G100345
XR_004578324.1 other downstream 1140253 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 1229373 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 2287752 18547925 ~ 18548289 (+) True LOC117597608