RNA id: XM_034305382.1


Basic Information

Item Value
RNA id XM_034305382.1
length 3040
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC113526343
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30816547 ~ 30825966 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCAGCGGGCGTGACGTGGCAGTACGCAGGCGCGAGCCCCGTCAGCAGGCGGACACCCGGAGCGTCTCGCGCTGAGAGAGTTTCCGTTAGCTGCGTGTGGAGTTCGGGTCTGTTCGGGTCGGTTCGGGTCGGTTCGGGTCTCGGCATGGGGCTGACCATCTCCTCTCTGTTCGGGCGGCTGTTCGGGAAGAAGCAGATGAGAATCCTGATGGtgggTCTGGACGCTGCAGGAAAAACCACAATATTGTACAAACTGAAACTTGGAGAAATTGTGACTACGATCCCAACTATCGGGTTTAACGTGGAGACGGTGGAGTACAGGAACATCTGCTTCACCGTGTGGGATGTTGGTGGTCAGGATAAAATCCGTCCGCTGTGGAGACACTACTTCCAGAACACTCAGGGTCTGATCTTCGTGGTGGACAGTAATGACCGAGAGAGAGTGGCCGAGTCTGCTGATGAGCTCTCCAAAATGctgcagGAAGACGAGCTGAGGGACGCCGTGCTGCTGGTGTTCGCTAACAAACAGGATCTGCCCAACGCCATGCCGGTCAGCGAGCTCACAGATAAACTGGGCCTGCAGAGTCTGCGCAGCCGaacggtacACGCTCAGGCCACGCGGCGCTACACAGGAACCGGGCTGTATGAAGGACTGGACTGGTTATCCAACGAGCTGTCCAAACGCTAGTGCTGTccatcacctcacacacacacacaccgagagagagagagagagagagatgtgtttgtgtctgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacgggTGATCTATCTATGAACTCTGTTCTGAAGAACCAGTGTGTGATGGATGGGACTAAAAGTGGGGGGAGGGGCTAGTCAAACCAAgcgctaccaccaccatgtttctaGTTTTTTCTCTTATTCCCTGTACTCTGTTGTCACTTTTAGTTTTATTGCAGTGATCCGATTTCTTAGTAACGAGACATAACGGGCCGACGTCACTTGATCCGCCTGGTTCAGTTCTGATAAAAGGAacaagccacgccccctttttGATCAGCGCACtgattatgtaataaaaaagtaGCGAGACGTTTATTTTAAGTTGCACCAGTTGAACTTCGTAGATTTGCCGTGACACTCGAGTTTACGAGCTGTTAAAATGTTCGTTTGCACCAAAGTAGATTCTCACAATTTCTCATCtcgttaattaattaaactagTTGGTTAATTGGATAACCATAAGTAGCAGTTTGGATTGTCTCCCTGTTCATCTGTCTAaactaaatctaatctaatctaatcacaGCAGCACACTGCAGGCATCATGTTTATTGATTCATTAACAATTAACCAATTAGTGTCAGTAATTAACCGTTTAATTCGAATGTACAGATTTCTACAGGAAGAAATGCGTTCTTAGTTTTTAACATCGAATGAAAACGTTGTTTTCCGttgatttaaaattaaaaaaaaactcgtAGGAGAATTGTGCTTATAGGAAACAGCAGCCCCTCCTCCTTTGATCACtctgggggcggggctaatttACAGGCTGCGTCACATGTTCATGTTGCGAATCACGGTTTTGTAAACGATGTGAATGGTAAACATCGTaagacacttttaaaaatgacaaactgcacctttaacaacGTTTACACGCTGAATTACAGTTTAACCTAAAGGAAAACTCCGCCCTAAAAATTtgcatattacatttataattataacgTGATCTTCGACAGCGTCCAGGATTTattttgcaacaaattttacttatttttaagtttaaatttctttcatGGCCATGCTGCTCTATTTCTACTTACCACtgatttcctacattacccacaatgccgtgcggaaagagagcgatgcagcggcgctttagtctctcagtctctctgtacactctgctcaaacacatcagcttccaaagcttcaactttcacacCAACACCACCGTCAGCACCATCGCCATCGCTCGTCATCTCCTCCATCGCTAACGAGCCGAGTCgtgtagctgcattgcattctgggactttgagtccggCGTTTATTCCGTCTCCACTGCTTCTACACTCGATGTCTCAGTAACATGGCGCTGAAAAGTGAGCGAgtaaagctgcttcgtgacaAAGGCTGTTGTTAAAATCGCTATAGAGaaagtagttttatttttaggagCTGATGGTGAAAGTGTGctagctccgccccctgtgACATCACAGCGACACACAGCCACTAACTTCACAGCAATGACAACAATCCAGCGCAGCAGGTTATCACCAGAATCGTGCAACACGTGGCAGGTGTGTGAGTAGAAAGAGACGTGACGTGTTTCAGGGTGGCGTTTCTGTTCAGCTGGTGCAGCGGGTTTCTGCTTCAGAGTTTACAGCAGTGTAATAAAACTAATCTACGATTCCAGCTCCGTGTTTTAGAGCAACACCTCGTCTAAACCCccgagttttattttataactggAGCCCTTAAGCGTCTGACGTCTACGTCCGCTTCGAAGGCCACCAGCACTTTTagattaaaccttttttttcttttcctttgcaCTCTTAACATTCCATCCTGAATCGACTTCGTGTGAATTTCATTTCCTCAAACCAAAGTCCAAGTTCAATGTGAAGCTTCCTGAGTGATGAGCAGACGAGCTCGAGAGGATCATTCCTTCATTTCTGTTGTACAGTtcttctctctcgctctcgatCATGTCCTCCGTGTGCTCTGCTGCTGGTGTTAATGTGAGTTCCTCGAGTGCTGCTGTTCACACTGGGGGTGTTATTTGTGTCTGAGCTCCTCAGGTGAACGCAGCGTGGCCCTGTCAGGtgtgttccacacacacactccttcatttTCAGTTATCAGGTGATGTCTGTGTACTTTCTGTATCTACGGTCTTGTTATTGAAACAATCCTGAAGACTGCAGCAGCATGCGCATAGCGAAGCCTTACAGACGTGTGTCCCTTTCATCAGGGTTTTTAATAAAGCCGGTTAATAAAATAACTGCAGCTGTAGCTCCTGCT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127204 lncRNA upstream 86890 30728834 ~ 30729657 (+) True G107629
TU127154 lncRNA upstream 253646 30557623 ~ 30562901 (+) True G107591
TU126899 lncRNA upstream 318232 30394495 ~ 30498315 (+) False dnaja2b
XR_003402817.2 lncRNA downstream 2110 30828076 ~ 30829663 (+) True LOC113526871
TU127253 lncRNA downstream 2134 30828100 ~ 30829657 (+) False LOC113526871
TU127254 lncRNA downstream 21993 30847959 ~ 30848474 (+) True G107657
TU127256 lncRNA downstream 24575 30850541 ~ 30854105 (+) True G107658
TU127258 lncRNA downstream 28647 30854613 ~ 30859896 (+) False G107659
XM_034305495.1 mRNA upstream 4572 30808138 ~ 30811975 (+) True arf5
XM_034305099.1 mRNA upstream 20745 30760383 ~ 30795802 (+) False terb1
XM_034305102.1 mRNA upstream 20753 30760383 ~ 30795794 (+) False terb1
XM_034305107.1 mRNA upstream 20845 30760383 ~ 30795702 (+) False terb1
XM_034305101.1 mRNA upstream 21891 30760383 ~ 30794656 (+) False terb1
XM_034305000.1 mRNA downstream 149743 30975709 ~ 30985960 (+) True pgr
XM_026911260.2 mRNA downstream 150060 30976026 ~ 30985960 (+) False pgr
XR_004578358.1 other upstream 2654678 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2654678 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2654678 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2745862 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2854776 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile