RNA id: XM_034305392.1


Basic Information

Item Value
RNA id XM_034305392.1
length 2723
RNA type mRNA
GC content 0.45
exon number 15
gene id srpra
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16838875 ~ 16928642 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTGAGAAGACTGCTTCAAGTTGATGAGTTAAATTGCAAGTTGAGTGTGCGTTTTTGCAGGCTTTTAACGGCTGTAGTCAGGGAGCTACAAGTTGCAACTTCTCCTCGAACGCAGAATAAATGCTGCGGTATACAGACACAGAACTCGGTGAAAACTATAACACTGACAATACTaattgctgttttgagaagGAGCGTGCTGGGAACAGTCCCTATTCCCATAATGCCTTGAATCTTAAGTACAAGCTGGACAATGAATTTGAGCTTGTGTTTGTGGTGGGGTTTCAGAAAATTCTGACACTAACGTATGTGGACAAATTAATAGATGATGTCCAGCTTCACTTCAGAGATCGTTATAAAAATGAGCTGGAGCAGCGGGATGCCCTGAAGTTCTTGATCCGTTGTTTTGAGTTTGATGATGACTTTCAAAGGCTTCTGCGtgtgGTGGAAGCTGAAAGCATAGCTAAACCCCAAAAGGCCATGCGGACTTACAGTGAGTCCCAGAAATCTCAGAAAACTGTGAAATCCATGATTGAGACAAAAAGTGGAGACAAAAGCAAGGAGTCCACTGGCAAGAAGAATAAACATAACAAGAAAGAAGTGAGCACTGTTGGGGCCATAATCCGGAAGTGGAAAGAACATCATTTCACCATAAACCGGTCACGACCAGGTGCTCCTTGCGAGATTTCTGGCAGAGGAGTGAAAAGAATTATCAGAAGAGTTGTCCAAGAGCCAAGGACCACTTGTGGAGAGCTTCAGAAACACCTGGAATTAGCAGcaggagcaggaggaggggAACAAGTTGAGCCTTCCCAGGCCAGCTCTAAGAAGGCAGTGGATAATAGGAATCAGGGCCTGAGCCAGGAGGAGATCATTCAGAAGAACCTTGCTGAGTTCATCCGCAGGCAAGCAGGTGGACGAACAGAAAAGTCTAATAAATCCCCTAAACCCCAGAAGCCAAAGGGGAAGGAGAAAAGAATTTGGGATATGGGTGGTACAAGTACCAAAGACCTAGACTACAGTGGAACCAATAACAAGAGTACATTTAATAACCAAGGGCAAGATGAGGAGTTCCCAGCTGAAACAcaaATCCAGGTGGGCTCTATGAAGGGTGAACTGCGAGATGTGGACTATGAGTCCTCTGAGGATAttgatgaagaagaggaggaacgAAAAGACATGTTAGTGACTCTTGATGTCAGCAGAAAAGGAGCCAGAAAAGGTGGTATTGGTGGTATGTTTGGAGTGCTGAAAGGTCTGGTTGGCTCAAAGACCCTGACTCGGCAAGATATGGAACCTGTTTTGGAGAAGATGAAAGACCACCTAATTGCTAAGAATGTAGCAGCTGACATTGCCTCACAACTTTGCGATTCTGTGGCCAGGAAACTGGAAGGGAAGGTCATGGGAACTTTCACCACTGTGGCGTCTATGGTAAAGCAAGCTCTGCAGGATGCACTGGTGCAAATCTTGCAGCCAAAACGAAGAGTGGACATTCTTAGAGATGTACTTGAGGCACAGGCTCAGCACAAGCCTTTCGTCATTACCTTCTGCGGGGTCAATGGAGTTGGCAAGTCGACCAACCTTGCCAAGATCTCATACTGGCTAATTGAAAATGGTTTCTCAGTGTTGATCGCTGCATGTGACACATTTCGTGCGGGTGCAGTGGAACAGCTGAGGACTCACCAACGACGACTGAACTCACTGCACCCACCACAGCAGCACGGACGCCCTGTTGTTCAGCTCTTTGAAAGAGGTTATGGCAAGGACGCCGCCGGCATTGCAATGGAGGCTATTGCTTACGCCcgtaatcaggggtttgatgtTGTGCTGGTGGACACAGCTGGCCGCATGCAAGATAATGCTCCACTAATGACTGCTCTGGCTAAACTTATTGCTGTCAATACTCCAGACTTGGTGCTGTTTGTAGGAGAGGCTTTGGTGGGCAATGAGGCTGTGGATCAGCTGgtTAAGTTTAACCAGGCACTGGCTGATCATTCAATGTCTGATCATCCGAGACTCATAGATGGCATTGTTCTCACCAAGTTTGACACTATTGATGATAAGgtTGGTGCTGCAATTTCCATGACCTACATCACAAGTCAGCCCATTGTGTTTGTAGGTACAGGACAAACCTATAATGACCTCCGCAGCCTCAATGCCAGAGCTGTTGTAAACGCGCTCATGAAGGCCTGAGTTGTGTGCAGAATTATGTGCATGAAGGTGTTCAATTGGATCTGGTTAAGGGTTGACCAGCCAGTTGCCACCACTTATAGTGTTAAAGTCTTAAGAGACTGAACCCTTTTATTTCAGGTCTTACTAGAAATCATGAACATACCTGTTTCTTCAAATTCGACTTTGCAAAACTTAATTTAAGCgaaagttttaaaatgtcttgAAGGTATTTGGGGTTATTTACAATATTGTATTCCAGAACCTGGCCTAGTGAAGTACTAGTGATTGACCAGTGCTTATGAAAGTCTCAACACAGCTAATGTCTGCTTGCAGCATCAGTACTAAAGTGATTATTACAGCATCATAGCACAAAAACTTTCATCCTATTCCATCTTGGAAGACTGTGTTGATGTTTAGCAAGGTGATAGAATAGGAATCAATATTTTACTTCCGTCATCTCTTGCTCCCTGGGCACAACCCCTAGTGCTGCTAAGCTCTCTGCCCAAAGGTAGAAATCAAATACAATAAAGGAAATCAAATTCtgactgta

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118977 lncRNA upstream 16567 16822368 ~ 16823102 (+) True G100370
TU118968 lncRNA upstream 79135 16760311 ~ 16760534 (+) True G100362
TU118966 lncRNA upstream 81326 16758139 ~ 16758343 (+) True G100360
XR_004578302.1 lncRNA upstream 83690 16753234 ~ 16755979 (+) False LOC117597522
TU118986 lncRNA downstream 10093 16938735 ~ 16939728 (+) True G100379
TU119104 lncRNA downstream 43188 16971830 ~ 16972238 (+) True G100480
TU119131 lncRNA downstream 82073 17010715 ~ 17024228 (+) True G100499
XR_004578316.1 lncRNA downstream 109409 17038051 ~ 17039276 (+) True LOC117597540
TU119127 lncRNA downstream 159312 17087954 ~ 17090706 (+) True G100495
XM_026927242.2 mRNA upstream 23397 16764695 ~ 16816272 (+) True slco3a1
XM_026927243.2 mRNA upstream 25220 16764695 ~ 16814449 (+) False slco3a1
XM_026927763.2 mRNA upstream 159134 16657601 ~ 16680535 (+) True rgma
XM_034305372.1 mRNA upstream 328690 16500760 ~ 16510979 (+) True LOC113534621
XM_034305369.1 mRNA upstream 579496 16259445 ~ 16260173 (+) True LOC113534692
XM_026935710.2 mRNA downstream 50293 16978935 ~ 16983976 (+) True ppp1r15b
XM_026935369.2 mRNA downstream 112715 17041357 ~ 17065819 (+) True blm
XM_026935368.2 mRNA downstream 112718 17041360 ~ 17065819 (+) False blm
XM_026935366.2 mRNA downstream 112727 17041369 ~ 17065819 (+) False blm
XM_026935370.2 mRNA downstream 112727 17041369 ~ 17065819 (+) False blm
TU118951 other upstream 238602 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 489882 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 1493701 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2315189 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 2798887 14035230 ~ 14040782 (+) False skor1b
XR_004578324.1 other downstream 471784 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 560904 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 1619283 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1622804 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1670072 18598714 ~ 18599375 (+) True G101419

Expression Profile