RNA id: XM_034305470.1


Basic Information

Item Value
RNA id XM_034305470.1
length 978
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC117597588
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30304632 ~ 30305794 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTTATTCTCCTGCTGGTGGTGACTTGTGGTCTGGCTGAAGGTCTGCTAAGAGAATATATTTTCATTAGCGCTCCATTAGGGTGGCGTGAAGCTCAGTCATATTGCAGAAGATATTACAAAGATCTGGCCACCATCACCACTATGGAGGAAAACAAACGCCTCGTAGAATCTGGATCTGGTTCTTATGAAAATTGGATCGGGCTGCGCAGAACATCAGGCACCTGGACCTGGTCTGATGGAGAACCACTTTCTTTCCCAAACTGGTTTGGTGACATTAGTGTTTTTCCAATATATTGGGACAATTGTGCTGTCACATCTTATGATTACTCAGGATTCTTAGTGAACTATGACTGCAGAACTGGCAGGAAGTTCTACTGCTATCGGTTCCTGATCCTGGTGAAGGAGAACAAGACCTGGCAGGAGGCTCAGAAGTACTGCAGGACTCATTACACTGGTTTGGCCTCCGTGATCTCCGAGACGAGTCTGCGGCAGCTGAAGCTAGAGACGGTGCAGACgcagacagagagtgtgtggaCCGGCCTGCGCTTCGTGAACGGAATATGGTTCTGGGTGAGCGGGGAGCAGCTGGGGAGCCTGGTCTCAATGCCTTCATGTCCAGCTCTATCTTACCGCTGTGGAGCTCTCAACACCACGACCAACACCTTGAAGAACCGAAACTGCAATGACAGGCTGAACTTCATCTGCTACCGgaaGTGattttacacaaatacacaatcTCCTTCAGGAAGAATATACGCATCACACGatatcatcattcatcatttatatatagttttaggtttatttactaattttttAATTAGGTTTAAGGTTTAGATTCTGGTAGAGGAACTGCAGCTGAACACAAGAGGAGGTTATTTGTTGGTGAAAGGGTcagattttataataatgtagGAATTTACACACGTAATAAACTTTATTACACCACAGTGGCGTAGAATGTAGtgctggatt

Function

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process
GO:0007601 visual perception biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126737 lncRNA upstream 240194 29971482 ~ 30064438 (+) True G107223
TU126736 lncRNA upstream 333539 29970878 ~ 29971093 (+) True G107222
TU126730 lncRNA upstream 381560 29922752 ~ 29923072 (+) True G107216
TU126633 lncRNA upstream 614816 29685374 ~ 29689816 (+) True G107140
TU126561 lncRNA upstream 822168 29482234 ~ 29482464 (+) True G107075
TU126913 lncRNA downstream 55796 30361590 ~ 30429223 (+) True G107387
TU126894 lncRNA downstream 88466 30394260 ~ 30498315 (+) False dnaja2b
TU126896 lncRNA downstream 88466 30394260 ~ 30498315 (+) False dnaja2b
TU126898 lncRNA downstream 88466 30394260 ~ 30498315 (+) False dnaja2b
TU126897 lncRNA downstream 88701 30394495 ~ 30498315 (+) False dnaja2b
XM_034304956.1 mRNA upstream 19098 30272544 ~ 30285534 (+) True cd151l
XM_034304955.1 mRNA upstream 19098 30272544 ~ 30285534 (+) False cd151l
XM_026914447.2 mRNA upstream 39071 30258068 ~ 30265561 (+) True taldo1
XM_034305375.1 mRNA upstream 178410 30106693 ~ 30126222 (+) True ddb1
XM_034304986.1 mRNA upstream 580565 29716593 ~ 29724067 (+) True iqcg
XM_034304987.1 mRNA downstream 5439 30311233 ~ 30353488 (+) True b4galnt3b
XM_034304988.1 mRNA downstream 59825 30365619 ~ 30408560 (+) True c2cd5
XM_034305175.1 mRNA downstream 72909 30378703 ~ 30379745 (+) False LOC117597544
XM_034305174.1 mRNA downstream 72909 30378703 ~ 30379745 (+) True LOC117597544
XM_034305529.1 mRNA downstream 104872 30410666 ~ 30426455 (+) True lmf2a
XR_004578358.1 other upstream 2142763 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2142763 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2142763 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2233947 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2342861 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile