RNA id: XM_034305529.1


Basic Information

Item Value
RNA id XM_034305529.1
length 3203
RNA type mRNA
GC content 0.51
exon number 14
gene id lmf2a
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30410666 ~ 30426455 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGAGGCGGGGTTTTCTGCCTGGAAATCGCTTCGACGTGTCTccggagcagcagcagcagcagaaggggaagtgtgtgtgcgcgtgtccGAGGGTGTGTGCGTTAAACCCGGGTTTCATCAGCTTCATCTCCCGCTGCAGGAAGGACTGCGGTTTCCAGGGAACATGGGGGAAACGCGCTTACCAGCACACATGTTCCTGTGGAGTCTTTCTGCCATCTACATGTTCGCCTTCGCGTCTCTTTATGTGCAGATTCCTGGTCTCTACGGTAACGAGGGCATCCTCCCGGCGAGGTGGAGGCTGCGGGTGGTGGGGAAGAGCGTGTGGGAGCAGCTGAGGGACACGCCCACTCTGCTGTGGTTCGGCCCGAAGCTCGGCCTCGACACGCAGCACTGCATGGAGCTGCTGAGTCTGAGCGGAACCGTTCTCAGCCTGGCGGCCATGACGGTCCCTGCCCTCAGAGACTGCAGGCTTTATCTCATCCTCTGGGTTCTTTACCTGTCTCTGTACCAGGTCGGCCAAGTCTTCTTATACTTCCAGTGggatAATCTGTTGTTAGAGGTGGGCTTCCTGGCCGTCCTCATCGCCCCTATGAGAATGCCGTGGAGTTGCAGGTCGAGTTTCCATGACAGTGTGACCTTCTGGCTGCTCCGCTGGCTGCTCTTCCGCCTGATGTTTGCTTCCGGAGTCGTCAAACTGACCAGCCGCTGTCCCACCTGGTGGGGACTCACAGcgctGACGTATCACTACGAGACGCAGTGTATCCCGACGCCCCTGGCCTGGTTCGCCCACCAGTTGCCCGTGTGGTTTCAGAAGCTCAGCGTACTTGCCACCTTCGTCATCGAGATCGCCGTGCCGTTCCTCTTCTTCAGCCCCATCCGCCGACACCGACTCTCTGCTTTCTACATGCAGgtCTTGCTGCAGGTGCTGATCATCCTGTCAGGGAATTATAACTTCTTTAACCTGCTGACCATCgtgctgtgtttctctctgctgGACGACGAACACGTCAACTTCTGGCTCTGCAGACGCACGCAGCAGAAAGAGAAGAATTCCCTGCAGGCCGTGATGGCGTGGGTGTGTGTTGCGGTCGAGGTGGGTGTTTACGCGCTGCTCAGCTACTGGACCGTCCTCTACTTCGACCTGAAAGTGGACTGGGACAAGAAAAGCGTCTCCTCTAAAACAGccTTCACACATTATGAGTTTAACAGCTTTCTGAAGGCCGTGACGGTGCCCAGTGTTTGGATCGGAGTTCTGTCTCTCACCTGGGAGATCATCACTGCCATGTTCAGgagtgcgtgtgtgaggggtgtgtttCGGCGTCTCTGGAGCACGATGCAGTGGGGCGTCTTCTCTGCAGCAGCAGCCTCCATGTTCGCCATCAGCCTGGTTCCTTACACCTACATCGAGTACGAGGCGCACTCTAACCTGTGGCCCGGTGTGCGCAGGGCGTTTGAGTTGACTGATCGCTATCAGTTGGTGAACTCGTACGGTCTGTTCCGGAGGATGACGGGGGTCGGAGGTCGTCCCGAGGTCATCATGGAGGGCAGCGTGGACGGCAGCACATGGACGGAGATTGAGTTCATGTATAAACCAGGGAACCTGAGCAGAGCGCCCCCGGTGGTGACTCCTCATCAGCCCCGACTCGACTGGCAGATGTGGTTCGCGGCTCTCGGACCTCACACACAGAGCCCGTGGTTCAGCAGCCTCGTACGCCGACTCCTGCAGGGGAAGAGGGACGtgatAAAGCTGATTCAGACGGACGAGACTCAGTACCCGTTCATTAAACAGCCTCCGGTCTACATCCGCGCTCATCGCTACAAGTACTGGTTTACTGAACCTAAAGAGGATGGctcattACCTcagaggtggtggaggaggatcTACGTAGAGGAGTTTTATCCTCCTGTGCGTCTCGGTGATGCGGTGTTGGAGGACATGCTGACTCAACACGGCCTCAATATAAAGgataAATCTCCCACACGGCGTGCTTCGTGTTCGTGGCTCTTGCGGATGTTGCAGTCTGTAGGTGAACACGTGAGGGACGTTCCTGCTCACGTCCTGCTGTGGACCCTCTTCAGTTCAGCAGCTACCGTGTGTCTGCTCAACTGTCTGCGCTCACACACTCGTcctccgacacacacacactcccgagagcagcagcaggaggaggagaggaagaaggaagagGAAGCGAGAAAGGaagcagaagaggaagaagaagtgAGACAGGAAGCAGAAGAGGCAGTGAatgagcaggagcaggaggaggaagaggaggaggaagaggagggatATGAGGAAGAGGAGTTTATAAAGAGAAGTGATGAGAGCGATGGAGAGGAAAATACAGAGTCAGAGCCTGTTAggaagaggaaataaaacactacttCTGAATGCGCTACATCACGTCACGTCACATCGCATCACATCGCATCGCATCTCTCTCGTGCTgcgttttctttattttctaaaagaatcgtaaattaaattgatttcttttgttaaacTCCTCACCTGCTTTCCTCGTGCGTTCTGGGCGATACGCAGAAATATCACAATGCTTagacattttcattaaaatcactttttttattttaaaagtaaaattagaAGTGCAACACAGTCGACTGAAGTGTTAGAACACTATAAACGCACTCGCGATattctcagaaaagtgtatcgtgGTGTAATTTATCGCAATATCAGTGTCGTCTTGTCATTTAAGCTGTTCCACCTGATCTTCAGTGCTTGTTTTATGTCTCatatttaatcacacacacacacacacacacacactttcaatcctgtgacgagagagagagagagagagagagagagctcataTTGAGTAGTTACTTATAAAAGattgattaataaatgaattagaGAAGTTAATTATAAAAGCTTAATTGGCCGTTTAGCTCCAGCGTTCTGATTGGGTCGTGAGATTTATCAGCTGCATGacaatccaattttttttttatctcatcaTTACTTCCTCCgcctcactaacacactcgttcatttattttattctatcaCTTTACAACCTGCTGATTGtgccttttctttattttttttcctctttctcttcttttcttttcttttttccctctgagTTCGTTCGGATGAATTTGTCAAAGACTAACACGAagtaaaacacttttttgtacatttataataaaacagtttacaccaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126906 lncRNA upstream 54117 30264964 ~ 30356549 (+) True G107381
TU126737 lncRNA upstream 346228 29971482 ~ 30064438 (+) True G107223
TU126736 lncRNA upstream 439573 29970878 ~ 29971093 (+) True G107222
TU126730 lncRNA upstream 487594 29922752 ~ 29923072 (+) True G107216
TU126633 lncRNA upstream 720850 29685374 ~ 29689816 (+) True G107140
TU126907 lncRNA downstream 26401 30452856 ~ 30455383 (+) False G107382
TU126908 lncRNA downstream 26401 30452856 ~ 30455383 (+) True G107382
TU127154 lncRNA downstream 131168 30557623 ~ 30562901 (+) True G107591
TU127204 lncRNA downstream 302379 30728834 ~ 30729657 (+) True G107629
XR_003402817.2 lncRNA downstream 401621 30828076 ~ 30829663 (+) True LOC113526871
XM_034304988.1 mRNA upstream 2106 30365619 ~ 30408560 (+) True c2cd5
XM_034305175.1 mRNA upstream 30921 30378703 ~ 30379745 (+) False LOC117597544
XM_034305174.1 mRNA upstream 30921 30378703 ~ 30379745 (+) True LOC117597544
XM_034304987.1 mRNA upstream 57178 30311233 ~ 30353488 (+) True b4galnt3b
XM_034305470.1 mRNA upstream 104872 30304632 ~ 30305794 (+) True LOC117597588
XM_034305443.1 mRNA downstream 65187 30491642 ~ 30498296 (+) True dnaja2b
XM_034305428.1 mRNA downstream 159328 30585783 ~ 30592140 (+) True si:dkey-88e18.2
XM_034305152.1 mRNA downstream 201957 30628412 ~ 30666725 (+) True vwf
XM_034305153.1 mRNA downstream 201957 30628412 ~ 30657541 (+) False vwf
XM_034305560.1 mRNA downstream 241821 30668276 ~ 30687719 (+) True LOC113526339
XR_004578358.1 other upstream 2248797 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2248797 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2248797 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2339981 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2448895 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile