RNA id: XM_034305532.1


Basic Information

Item Value
RNA id XM_034305532.1
length 4285
RNA type mRNA
GC content 0.44
exon number 13
gene id dner
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20635028 ~ 20657916 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctccCAGACTGTCTCATTCTGCCTCTTTCActattctgtctgtctctctctctcctcccctcacTCACCCgccctcactcactctctctctcttgctctcgcttacacacacattctctcttgctgtctctgtctcacacacattagAGCTGTGGAGCTCTGCACTACACATTAGAGAAGATCTCGGTGGTAAACGGGTGTATGATGGAGCACATCGCGCTCGTTCTTCCTCTCCTCATCTTCCTTGCGGAGAGGGGGGTCACAACTCCTGTAACCTCTGACCCTGATGTGACCTCAACAATCCCCACGGACCCGTGTGAGGGACAACCGTGTCTAAATGGAGGAGTGTGTACACCTGCAGAGGGAGAAGAGCTGAAGTATATCTGCACATGCAGTGCACAGTTCACTGGACACAactgccagTTCTATGCCGACCCCTGCGCCAGTGACCCCTGTCTCCATGGTAACTGCACACGTGAAGGtgcagagtttgtgtgtgtgtgcagcgaCGGGTATGGAGGAGTCAAGTGTGAGCAGCCACCTTCAGCCTTTGACCTTGTTGAGTCCAGCTGGGACCTGGCAGCTACTCCAGCTACCACTACTCAACCGTctcaaccaatcacagagctGAGTGACACTGAGGCCCCACCCACTTTGCAACCATGGCAACCAAAGCCTGGACAGAGAGTGGTGGAGGTCCAGTGGGAGGAGCTCCAGATCACTGATGGATCAGAGTGTGTGAGCATCGCAGGCACTGAGCCGGCTGGAATGATGACGGTTTCTATGGAGATTGCAGAAGGAACTGCAGTAAAGTTGGTACTGAACATTAGTGGAGCTGCAGCATTGTGGCGTGTTGGAGCTCTCGGGTTTGACCGGTGTTCAGTATCTGATGGCATGGTCGTATGGTTCCAGCAGGACTCCAATGGCCTCGTAATCTCTGATCAGTTACTGCCACTCGGTCACAACTACTTCATCActgtgctGCGCATTGGAGCCCCTTCTGGTCTGGAGGTCACTCTCAGATTACAGTTCACTGTAAAGTCTGCTAGCTGCATGGAGCCAGGCAGCAGCTTCAGTGACCCACAATGCACTGGGAGAGGGAAGTGCATCACACAGTCTTCTGTGagcaCATTTTATTGCCGGTGTGATGTTGGATACTCTGGAATCTTTTGTGAGGAATTTGACGCATGCTACACAAACCCATGTGAAAACAATGGGACCTGCAGTGAcctcacacagagacatgaTGGGCATGACTACACTTGTACCTGTGCACCAGggttTGAAGGCCAGAATTGTCAGTCTCGGGTAAATCACTGTGCCTCAGAACCCTGCAAAAATGGAGCAACATGCACAAACACCCTGAACGGCCCACAGTGCACCTGTGCAGAGGGTTATAAAGGAAATGTCTGTGAGGTAAGAGTTGACCCATGTGCTTCTGGTCCATGTCACAATAATGGGACATGTTATCTGCAGGCCGGTGGACAGGGCTTCAGCTGCACCTGTCCTCCTGGTTTCACCGGACACACCTGCACTCAGCTCGTCGATTTCTGCTCACTCAACCCGTGTGCACATGGTGTATGTCGCAATGTTGGCACAAGCTATAGGTGCCTGTGCGTGccaggatatcatgGGTTGTACTGTGAGGAGGAGTATAACGAGTGTCTCTCTGCTCCATGTCTAAATTTTGCTACGTGCCGGGATCTGATCAATGCctatgaatgtgtatgtaccGCAGgttttgtagggAGACACTGTGAGATTTATAAAGATCCATGTGCGAAACTGCAGTGTCAGAATGGAGGTCAGTGTGAAAGAAGGCGGAGCAATgcaacctgtgtgtgtgcacctggaTACACAGGTGAGAACTGTGAGATTGACATTAATGAGTGTGAGAGCAGCCCATGTCATCATGGTGGCACCTGCATTGACCAGTCAGATGGCTTCATCTGTCACTGCCCACCTGGCTGGGTGGGCGGGGCCTGTGAGATCCATCTGCAGTGGAAGGCATCTCGTACAGTCGATTCCCTCCCTAGCATGCCACGTCACTCTCTCTACATCATTATTGGTGCGCTGTGTGTAGCCTTCGTCCTCATGCTCATCATCCTCATTGTTGGAATCTGCCGCATCAGCCGTATCGAGTATCAGGCCTCGTCTCGTCATGCCTATCAGGAGTTTTATAACTGCCGCAGCATCGACAGTGACTTCAGCAACGCCATTGCCTCCATACGCCATGCCCGgTTTGGGAAGAAATCTCGCCCAGCCATGTACGATGCCACACCCATCAACTACGAAGACTTCAGTCCAGATGACAAACCGCTTGTCACACTCATCAAAACTAAAGATCTGTAAagcacatgcgcacacacacacacacacacacacacacacacacacgcaaatccAGCCTTTCCAATTAGCTGATGCCAACCATTAAGTATTAAATAACCTTAATAAAGgacttaataaaaaatttaattaaactatAAAAGATAATATTTAGATGAACTTTGATATTGAATAGATCTATTTTACCACTGATATGCATAATCAGCTAAAATTTGTGTTTTATAGATGTATTTATCAGTAAAGGCCTTTGTTTAATTGCAGAAAGAAGAACTACAAAGAGCATAAGTGTCCCTAGTTTTGCACACTTCGACGTAGTCTCCTTCAGTAAAGCACTGGTATTGTAGGCTGTAATTTTGGCTTTGTTCCAAACACAGTTAGTGTTCTTACTAGAACGTTTAAAGCTCTGTCCAAATGCTAAAGTAGGTTCTAATGAAACCATTCAGTGGGAGGGAGTGTTTGTATTACCTACAATGCACTATGTTAACACTGAGAAATAGCTGCTAGCAGTGAGTCATTTTTACACATGTAACGTTCTGTTTCAgaatatataacaaaataaacataaagttaAATAGTGTATTTGTCTGTAACATATAGCTAAAGATCACATGTGTATAACGTCCCCGTCAGGCTTTAGCTGAGTGTGCCGATTTACGTACAGCATATGATAGCACAAAGTTATGCCAGTGTAGTGAGCGTGCTGGTCCCCCTTGACATAATCCTTATGAAAGGACCCTTAATTTGCAAGTTGTGATAATAGTGGTGGGCTAGTTAGCTATGTAGTTTATGttactacactgtacactgctTCTTGATGTAAcacttattttatataacattttattttacagagtgGTGGTAGCTACTACTAACTACTAAACTAGCTTGTTGTTTAGCTATTTATACTTAGTTGTCAGCGAGGTAACTATATTCAGTATTTTACAGatattagctaactagctatttATGTTTAGATAACGAACACCAGTGACAGTCCATTGTTGTAACACTAGCTAACTTCATTGCAAACTAGTTACCCTTAGCAAACAGCTACCTATTTTTcattgattaaaatatatttttcagtgtCTTTGACATCAGACCAGGTACAATGGCTTGCTGTACTATGAGTCTTCTGTGTGACACAGTGCACTAGCCATTTTAAGGTATCTTGATTAAGGTTACTTCTAATAAGAACACTTCTATCAAACTTTTGGGACAAAGCTTTTGTGCAAGCATAAGTAAAAACAAGCTCTAGGCTGCCTTAAACACTGCATGGCTAGACTCGGTGGTTTCACAGTTAAATTATTTGTAAGATGTTGTTGAATGTTTATCTAGTGTTCTCTTTGCCGGAGTCTTGTGCACTCATCCTGGTGGTAGAAGAGTGTTAAGTGCCATTGTATCGTAAATAACTGCTTTTAACCACTATCATTCACTTGGTTTGTTTTACTAAATTCATCCACTATAACTATTGATGTAGCTATGATTTAGCTGTTGTCTCCAAAATGATACcttactccctattccctacaaaTTGCATTATGCAAAGTACATTCTGTCCCAATAAGGAACACTAACCTACTGAAATGCACTGTGGGATTTTGTGAGCTACATATTTTCCACTGCATTTACAAAAATGACTCCTGCATCTCACTATGTAGTGAATATGGCATATTTTGACATGTGGTTagctttaataatgtttaacatttttttattgaatgtaAGTCTTGTTTTACTCTATCCTTTCTGTCCTtcataaaactaaaattaagAACAGTAGTTTTGTTATCTGTGAGTCAATACTGGCATGTTCTGTAGACTGAACTATGGTGAGTACTGTGCAGTGTGAGGGCTTAGTGATCAagctaaaaacaacaaaaaaaagtcgtattacatacatgtgatttttcttcattaaaaggTTAAATGTga

Function

GO:

id name namespace
GO:2000178 negative regulation of neural precursor cell proliferation biological_process
GO:0060253 negative regulation of glial cell proliferation biological_process
GO:0010001 glial cell differentiation biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24463 DNER; delta and Notch-like epidermal growth factor-related receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121167 lncRNA upstream 27434 20606602 ~ 20607594 (+) True G102374
TU121162 lncRNA upstream 53083 20578618 ~ 20581945 (+) True G102370
TU121110 lncRNA upstream 158857 20475804 ~ 20476171 (+) True G102327
TU121108 lncRNA upstream 161291 20473342 ~ 20473737 (+) True G102325
TU121068 lncRNA upstream 170396 20463045 ~ 20464632 (+) False G102286
TU121171 lncRNA downstream 9228 20667144 ~ 20686188 (+) False pid1
TU121203 lncRNA downstream 189858 20847774 ~ 20849338 (+) False irf2bp1
TU121205 lncRNA downstream 189858 20847774 ~ 20849338 (+) False irf2bp1
TU121238 lncRNA downstream 272271 20930187 ~ 20934094 (+) True G102415
TU121214 lncRNA downstream 281497 20939413 ~ 20950991 (+) False prx
XM_026914155.2 mRNA upstream 4424 20573853 ~ 20630604 (+) True trip12
XM_026914159.2 mRNA upstream 5703 20573281 ~ 20629325 (+) False trip12
XM_026914157.2 mRNA upstream 5703 20573316 ~ 20629325 (+) False trip12
XM_026914160.2 mRNA upstream 5703 20573332 ~ 20629325 (+) False trip12
XM_026914156.2 mRNA upstream 5703 20573843 ~ 20629325 (+) False trip12
XM_026914123.2 mRNA downstream 5722 20663638 ~ 20686186 (+) True pid1
XM_026913988.2 mRNA downstream 115688 20773604 ~ 20819328 (+) True sphkap
XM_026914092.2 mRNA downstream 186758 20844674 ~ 20848380 (+) True irf2bp1
XM_026913314.2 mRNA downstream 202866 20860782 ~ 20864194 (+) True foxa3
XM_026914467.2 mRNA downstream 248147 20906063 ~ 20924289 (+) True pld3
TU120293 other upstream 1511151 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 1513902 18957428 ~ 19121126 (+) False sema4ba
TU120151 other upstream 1840755 18793635 ~ 18794273 (+) True G101466
TU120119 other upstream 1895030 18738343 ~ 18739998 (+) True G101434
TU120104 other upstream 2035653 18598714 ~ 18599375 (+) True G101419
XR_003402807.2 other downstream 368111 21026027 ~ 21097841 (+) False LOC113526807
TU122021 other downstream 1129200 21787116 ~ 21794669 (+) False zbbx
TU122269 other downstream 2294761 22952677 ~ 22981150 (+) False LOC113526422
trnak-cuu_22 other downstream 2505191 23163107 ~ 23163179 (+) True trnak-cuu_22
XR_003402832.2 other downstream 2614142 23272058 ~ 23272208 (+) True LOC113527010

Expression Profile