RNA id: XM_034305539.1


Basic Information

Item Value
RNA id XM_034305539.1
length 5210
RNA type mRNA
GC content 0.43
exon number 11
gene id mef2aa
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15723423 ~ 15809116 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaaggagtgaaaGAAAGTATTAAGGTTATAGAAAGTTTCTGGGTGTTAGAAGGAAGTGTGGCCTAGCTGAAGTGAAGACAGACACATGTGGAGAAGGCCTTTACAGCAGGTTCTGTGaaggcagcagcagcaccacagTAGATACAGGAAAATTTCTTTCCCAAGGAGGAGGAACCAGCAGGAAGCGAAGTGCTGCGCAGGAAGGAAGAGTGCAAGATTCGAGCTGGACTTTGGGGCCTGAACGAAGTTTGTCTGCGCCTCGATCAGTGGATAGTGGTGCAAGtacttcaagagaaagagaaggagagacagaaagagaggaagatcgagagaggaagagagagtgtACAATGTGCTAGTGGAGCGGAGGAAGACAAGTGCGGGTGTTTTTCTGATATTCTCTGGGTGCCAGAGAGACTGACTAGGACGCAAAGATGGGACGGAAGAAGATCCAGATCACCCGGATTATGGATGAGAGGAACCGCCAGGTGACTTTCACCAAGAGGAAGTTTGGCTTGATGAAGAAGGCCTATGAGCTCAGTGTCTTGTGTGACTGCGAAATTGCCCTGATCATCTTCAACAGCTCCAACAAGCTCTTTCAGTATGCCAGCACTGACATGGATAAAGTCCTGCTCAAATATACAGAGTACAACGAGCCTCATGAGAGCAGGACAAACTCTGACATTGTGGAGAAATTAAGAACCAAAGGCCATAGTGACTGTGCCAGTCCTGATCCTGATGACTGTTTTGGCCATAGTCCCCTCATGGATGACCGTTTGGGCAAACTAAATGAAGAGAGCGATTTAATATACAAGCGCTCTGGTCCCACAGCTTTGCCGCAGCAGAATTTCTCCATGCATGTGGCCGTGCCGGTGACAAACCCCAACTCCATGAGCTACAACCCTGGGGGCATTCTGAGTAGCCAGGGCCTGGCAGCTGCTGCTACAGCCTCACTAAGCGAAGCCACCATGCTGTCCCCTCCTCAGACCTCTCTTCAAAGAAACGTGGTGCCTGCTGGCACCCCCCACAGGCCGCCCAGCACGGGCAGCGCAGGAAACGGCTTTGTGAACCCCAGGGGCTCGCCAGGACTTCTGGGTACCAGCAGTGGGAATGGACTGGGAAAAGTTATGCCCACGAAATCACCGCCTCCGCCAGGGGGAAACATGGTTATGGGGAACCGAAAGCCAGACCTGAGAGTGGTCATACCGCCGTCCAGTAAGGGAATGATGCCTCCACTGtctgaggaggaggagatggagttGAACACTCAGAGGATAAGCAGCTCCCAGTCAACCCAGCCTCTTGCCACACCCGTGGTGTCCGTCACCACCCCGAGTCTACCACCACAAGGCCTGGTCTACTCCGGCATGCCAACTGCCTACAACACCGAATATTCCCTGAGCAGCGCTGAGCTTTCCTCGCTGCAAGGCTTCGGTTCTCCAGGGCTCTCACTGGGCTCCATGTCGGCATGGCAACAGCACCAACTGGGCCAAGCAGCTCTCAGCTCACTGGTGGGTGGTCATTTACCTCAGGGCTCCAACCAGTCCATTAACACCAGCCCGAACCTCACCATCAAGTCAGAGCCCATCTCACCTCCACGTGAGCGGGTCACTCCGTCCGGATTCCCACATCAACAGCAGCAGCCTCCCTCCTCCAGCCGTCCTGACATGGGCCGCTCACCGGTGGACAGCCTGAGCTCCTCGTGCTCCTCGTATGACGGCAGCGACCGCGAGGACCCACGTGCCGATTTCCACTCACCGCCGATTGGCCTGAGCCGAGCCCTCGCACCTGGAGGCGACGATCGCCACAGCCCCTCTGTCAAACGCATGCGTATGGACTCCTGGGTAACATAAAGTGACCAGGGAGGGCAAGACAGGCCacataggggagagagagtgacaggCCAGAAGCAGGGAGGGGTCataattgctattattattattattattattattattattattatttaacttcaTTTTTGTTTGGGAAGGCTGTGGGTGTGGCAAAGAAAATTCAAGATATCCCAACATATTGAAATTTAAGTTGGGTAATAACTATTGTCgttcaattattttaatttgacttGTTTTGGAAGGAGGCGGGCGCACGGAAGGAAATTTCAGCTGTCCTGACATATCAGAATTAATGTTGCAACTGAGTGGTGAGAGAGAAATCAGTTCTTCACACTGATTGGGTTACTTAGAGCAGTTGTTATCAGGTACTTTAAGCAGTTCAGATTTAGCAAAAGTCCAAcatttagagagaaaaaggaagatGTATGGAGATGTTTCAGGATAGTGTAGTCTGGTCTGGTCTGGCACTTGTAGTAGCTATTTCTGCTGTTGAATTTGCAGGGTTGCGCACAACCAGAGCAAGTTTAGGCCGTTTGCAGGCTCTCACCAGCTGGCCTCTTTAATAATCATactttatacacacttacaGACATGTTAACTTATTCAGGATTGACCATGTTTCAAAAAAAGGTTTTGGTTTACAAAGGGAGGTTCATGACTAAAATGAGATCACACTTATACAGTTTAACATAGGAAGATGATTATGTTTGtgctatttttttgttgttgttgttgttgttgaaacacagcttttttctttttagaatgAAAAATAAGTTAAACAGTAGCCCAGTTGAACTGGAGACAAGAGTCCtaaattaaaatgcagctcaaacaatggttaaaaaaaaaaagccaaagtaTGTTTGTTAGTTAAAGTTTTGGTTTGAAAATTCTCATTTCTCTTTCACTATTCATTTCCTCTTAGTTCTGTTGTAAAGTATTTTGTTTCAAACTATGATAAAATACAAACCAGATCTTTAAACAGATATCTAAAGCCATGGACACTTGGTGTTCTGTTTGTAAATTAAAGATTTGAGCCAAACCTTTCCTTTTGTTATGTATATAGCAACTTTAATATATATCACCGTCGGTGTAAGTACGTATGTATTGTACTTTCACTggattgaagaaaaaaaaagtatatttttgtggatTACTGCCAGGTTTACAAGGCGAGATCCTTAATAAGTAGAGTATTCACTGGTTAATATTTACTATTTTGTTAACTATACTGTACTTTCTTTGAATCTGACttattattgctattaataatcaaagtgtttttatttgaaagaaGGATGTTTTATGGGTCGCTTTCCCATTAATAATGGTAAATGTTTGTCCTTAAGAAATTGTAACAGTGCTGTAAGTTTGAAACGCcactgtctcttttttctctatttttgtttttgtaaaaggattactgtaacattaaggaaagcttttttttctttctttactgtaCACTTTGTGGGAGGGGTTGGCCACGGCTGCTGAACACACTGCCTACTTTCACAACCACGGATTCATTTCAAGCCTCAAGGCAATGGCCTTTCAAATGCCAATTAGTGACACACATCTTCTCtcaatggaattttttttttttttcaactgacTTGCATCACGATTTAAACAAATGCCACCTTTTGTTGATCAAATTTGATTGATACACTCAGCTTCTTTTGATGGAACCCTTCATCAAAGTCACTTAATGCCCCCATTATTATCTACctattgtaaataatataacctaatacatacatactatGTACAGAACACACTTCCCATTTTCGTTTGGTGAATTGGCTCGCTAGAATATCGATCCTCTCCAGACTGAGGGAGGCCACTCTGGAAGCGCCAGACGctctgttgttgtgtgtgtacgtgtgtgtgcgtgactCTCCGTTTTCGCATCTATCTCTCCACACTGAGGCTCTTTCGTCCATGCTTCTTTCGCCTGCCTCGCACCTCACTGCCCCCTTCAGGTGGAAGAAGCATCAGGGGATTCAGCAGCAAAAAGACATGCTAGACAATGCAAAACCAATCTCTCTGCTGGATTGCACATGTTTGTACAGTCaggtttggcaaaaaaaaggcttcCTCTCTTTAAATTTGCTATCTATTTCCCCCACTTTGTGTGCTCTTGTCCCCTTTTTAGATACCTCTCTGCCCTAACAGGCACCATAGCAGCTGGCAATAAGCTGATGTTAATCTATGCAGTCTCTGAACACACAGCCCAGCACACAGCGCCATCAAGAAGGCTCATTCACACAGCATTCACAATGTTAGGATTTAGAATTAAAATTGGTTTTTATCATCTGCCCATTAAAGACATTTCCTTGCTTATGAACTGCATCCTCTGTATGTGCACAGTTGAGAAAATGACTGTTAACCTTAAACCCTTAAGTGCTTGTATATTAAGAAGGCACACCATTTTATTGGCTACTTTGTAAGTACCACAGAAAGCCATTTCATGCTGAGTAACCTTAATGCAGACCCTGGTGTCTATAGCGTTCCCTGCCTTAGTGTGGGAACAAGTTTAGCTGAAAAGCGAAGTTTCAAAAAGTTCATTAGAAATCCATTTTGATGATGTCTATCACTAATGTGTTACCACAATCAATGCCTTTCAGGGTTGATAAgcaataatgcaataatgcCATCGCAGTGCTGTAAACTGCACTGTGGAGTAATGATATGCAGGGCACTTACactgacacgcacacacacacacacacacacacacaagctagaTTAGGaatcagggagtttttcctcatgtGCACAGTTAGAGCTTTATTCCAAAGAGTTCTAAATTGTGCATGATAGTtctcattaacattaatttcattcccaatgaaaaaaaaaaaaaaaaaaaaaaaaaagctggacaaAGTACCAGGTTGTCTATCAATCCCCCAGCAGACACATACAAGAAATACATAGGAAATCTAAAGAGAGGAAGTTGCTCGTCTTGGTCTGAGTGCTGCTTACGACATCACAAAATGAACTGAATGTGAAATGAAGGGTTTCAGGAGGAAAACAATTTGTAGAGAACTTCACTTTGCTGTGCAAGAGTACACTGCTTTGCTTTATGGCTTTTTCTAAAAACAGAACTATGTATTTGGTAATTGTTTGTAGTTACTAGTTCAATTCAAGAAGCTGTTTGCGGTTTGGATGCTCAAACCGTTTGGCGGCACAAGCTGGACTTTGTTGCCATGAacgaaatgaaatgttttagatagaaaaaaaaaaaaagaatcaagagAAAATTTTAAGCTAATCTGCATTCTATTTCCCTTGAATGTGTTGTTTTATCTTCATTATACAATAAATATTCTAGTGAACTTTT

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0001756 somitogenesis biological_process
GO:0030239 myofibril assembly biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578360.1 lncRNA upstream 114320 15607970 ~ 15609103 (+) True LOC117597598
TU118450 lncRNA upstream 200699 15522020 ~ 15522724 (+) True G99893
TU118406 lncRNA upstream 255207 15467938 ~ 15468216 (+) True G99854
TU118435 lncRNA upstream 268384 15450819 ~ 15455039 (+) True G99879
TU118368 lncRNA upstream 499569 15223649 ~ 15223854 (+) True G99819
TU118682 lncRNA downstream 50143 15859259 ~ 15859474 (+) True G100097
TU118687 lncRNA downstream 54175 15863291 ~ 15863493 (+) True G100102
TU118688 lncRNA downstream 54574 15863690 ~ 15863915 (+) True G100103
TU118749 lncRNA downstream 59431 15868547 ~ 15868764 (+) True G100160
TU118750 lncRNA downstream 60840 15869956 ~ 15870159 (+) True G100161
XM_034305453.1 mRNA upstream 51089 15660992 ~ 15672334 (+) True fan1
XM_026927553.2 mRNA upstream 51089 15660997 ~ 15672334 (+) False fan1
XM_034305454.1 mRNA upstream 52535 15660992 ~ 15670888 (+) False fan1
XM_026927405.2 mRNA upstream 70136 15613280 ~ 15653287 (+) False cbfb
XM_026927406.2 mRNA upstream 70153 15613281 ~ 15653270 (+) True cbfb
XM_026927790.2 mRNA downstream 3398 15812514 ~ 15856112 (+) True mctp2a
XM_034305369.1 mRNA downstream 450329 16259445 ~ 16260173 (+) True LOC113534692
XM_034305372.1 mRNA downstream 691644 16500760 ~ 16510979 (+) True LOC113534621
XM_026927763.2 mRNA downstream 848485 16657601 ~ 16680535 (+) True rgma
XM_026927242.2 mRNA downstream 955579 16764695 ~ 16816272 (+) True slco3a1
XR_004578337.1 other upstream 377455 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 1198943 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 1682641 14035230 ~ 14040782 (+) False skor1b
TU117337 other upstream 1934033 13785095 ~ 13789390 (+) False G98972
TU117309 other upstream 2007657 13691607 ~ 13715766 (+) True G98946
TU118902 other downstream 540341 16349457 ~ 16349787 (+) True G100306
TU118951 other downstream 791141 16600257 ~ 16601067 (+) True G100345
XR_004578324.1 other downstream 1591310 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 1680430 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 2738809 18547925 ~ 18548289 (+) True LOC117597608

Expression Profile