RNA id: XM_034305560.1


Basic Information

Item Value
RNA id XM_034305560.1
length 5773
RNA type mRNA
GC content 0.48
exon number 27
gene id LOC113526339
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30668276 ~ 30687719 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGCCTGTGTTGTTCTTGATGGTGTTATGTAAATAAATCTGACCTTGACTCTGACGGTTGTTTACATCagtaagtgtgagtgtggagCTGAACAGCGGCGGTGGAACTGACTCGAGCAGCATCCGGGTGTGTTGTGACATGCAGCAGTGGAACAGTGATGACACACAGCGGTAcagcgtgagtgtgtgagcggTTTTGAGCCGGTTGTGTCACTGTGCTCGGTCTGCTGTACAAAGTTTCGGGCTGATCGTAAAGCCTGAAGCTGCGTGCGCGCGGAATTAACGGGCGGATTGTCCTCCAGCTCAGACACGCGACGCGCTTTTCACCCAGAAACCATGTCGTTTCCCAGGTCTGGCGCAGAGACGTGGAACGGAGCTCCAGAGCGCATGCGAGTAACTACAGCTGTGAGTGAATCCTCGTCCATTCACAGTGAAAAACTGCGCAGTCTCGCCCGAGACATTTCTGAAATCAGCCACGAGAAAGCCACCAGCCGACAGGATGCAGGAAAACCTGCTGAGGAAACGGATAAGCCCCGCCCATGTCCGAGAGGAGGCGTGTGTTTCGCTGATGGCCGAAGAAGAGTTGATTATGTGCTCGTGTATCACTGTAAGAGACGCTTTTCCATCGTCACCAACGGCAACCTGCCGCCCGAGAGTCCCACCCCTCTCCACACGGACATGCAGGCCGACCTGGCGGAGGCGGAGCTGGAAATGGGTGTGGCTCCTGGGCCAGGAGAAGTAGAAAAAGCCCTGATCAGGGAGGAGTTTGAGCGAGGGCTGCAGGAGCAGGGTCTGGAGATCGAACGAGACGTAGAGatgAAGACAGTACGTTTTACGCGTCTCCATGTCCCCTGGTCTGTACTGAGTCGTGAGGCAGAGCTTCTTAAGATCAAAGTTCCTACCAAAAGAATTTATGAGCTGAAGGAGAAAACAGGAATTGCTGGATTTCTGAGCTCACTTTGGGAGAAAATAAATCAGCCGTTCCAGCCGGGAGTCCCGGATCCCCAGAAAAACCCCCACACACGGGTCCTATCACTCCCGTTCAACAGAGAGAAGCTacacctGTTTGATATCAAGTCGAGAAACACGCTCTTCGACACTGCGACACGAGGGAGAATTGTGTTTGAGATCCTGAGACGCACGGCGTGTACTCAGACGTGTCACACTATGGGAATCACGTCGTTACTTGCTAAAGGTGTTTACGACGCAGCGTTTCCTTTACATGATGGAGACTTTAACTCCGATGTTAAAGAGCTTCGCAATGACAGACAGttgTTACATGATGAATGGGCCAATTACGGAGTTTTCTTCAAGTATCAGCCAGTCGATCTCATCAGGAGGTACTTTGGGGAGAAGATCGGTCTGTACTTCGCCTGGTTGGGAGTTTACACGCAGCTGCTCATTCCCGCCTCAGCCATGGGGATTGTGGTGTTCCTGTACGGCTGGATGACTGTCGATACAAACGTGCCCAgtcaggaGATGTGTGATAAGCGTCTGAACTTCACCATGTGTCCtctgtgtgatggagtgtgtgattattggCAGTTGAGCAGCATGTGCAGCACAGCACGGGCCAGCTATCTGTTCGACAACCACGCCACTGTCGCCTTCGCCATCTTCATGTGCCTCTGGGgggctgtgtTTCTGGAGCACTGGAAGAGGAGACAGCGGTGTCTGCAGCACAGCTGGGATCTCTCCGGCGTCGAGGACGAGGAGGACAGAGCTGAAGATGAGCTGCGACCAGCGTATGAGGATTTCCTCCTTCAGAAGCGgcagaaaaagagcaaaaacaaagagaaagatgCGGTACAGACAGTGATGAGTTATGCTCTTTATTCAGATGAGAGGACACATGACATTGGTATAGAGAAGCTGCTATCTGCAAAAGGAGGACAACCAGTGtttgcTTCAGAATCTCTTACATGGAGAGACCGGCTGCCGGGATACTGCATCAACATTTCCTCCATCCTCCTAATGgtgggggTCACACTGTCGGCAGTGTCTGGTGTCATTCTGTATCGCATCATCGTTTTCGCAGTGATGTCGATGAACCCTGACCACGAGGCCAAAGCCAATGTACGCGTTACCGTGACAACCACAGCTGTCATCATCAACCTGCTGGTGGTTTTGGTGCTGGATGAGATCTATGGAGCTGTGGCCGCCTGGATCACGGAGCTagAGATTCCGAAGACCGAAGCAGCGTTTGAGGAACACCtgatcctgaagacttttctgcTCAAGAGCATGAACGCTTTTGCACCTGTCTTCTACGTGGCGTTCTTTAAGGGCAGGTTTGCGGGTCGTCCAGGTGACTATGTGTACGTCTTTAAAGATTTCCGGATGGAGGAGtgtgcTCCAGCAGGTTGCCTCATTGAAGTGTGTATTCAGCTTGGTATGATCATGTTGGGGAAGCAGCTCATCCAGAACAATGTGTTTGAGATAGCTATCCCAAAGCTGAAGAAGATGTATCGTAAGTataaagaggagaaagaaggaggggagaagaagaagaaggacaaGGATCCAAATCGGCCACGGCACCGCTGGGACTTAGATTACCAGCTGGAGCCGTATGAGGGTCTGAGCCCGGAGTATATGGAAATGATTATCCAGTACGGGTTTGTTACGCTCTTCGTGGCCTCTTTCCCGCTGGCTCCCGTCTTTGCTCTGCTCAATAACGTCATTGAGATTCGACTCGATGCTGCTAAATTTGTAACTGAAATCCGGCGGCCTGATGCTGTCAGAGCAAAGGAGATTGGAATATGGTACAACATCCTGAGCGGCATCAGCAAGTTTGCTGTTATCACAAATgCATTTGTTATTTCCTTCACGTCAGAGTTCATTCCACGGATGGTGTATCAGTATCTGTACAGTGAGACAGGAACCATGCATGGCTTTATAGACCACACACTGGCTTACTTCAACACCAGCAACTTTAAACCTGGCACCGCGCCCAACAGCACACGCTTTGACCGGGAACTTCGTATCTGCAGgtATAAAGATTATCGAGATCCCCCCTGGTCCCCTGAGTCATATCAGCTCTCTAAGCAATACTGGTCTGTGCTCGCTGCCCGACTTGCCTTTGTCATCTTTTTCCAGAACCTGGCAATGTTCCTCAGTATGCTGGTGGCATGGTTGATTCCGGATGTTCCCCGCTCTTTGAAGGACTGCCTGAAGCGGGAAAAAGCCCTGTTGCTAGATCTTCTCCTTAGTGAGGAGGTGGAGAAGCAGCGACGGCAGTCACAGCATCCTGCCAATATCAACATAACAATCAATGCCTCAGAGGAAGAGACCATGGACATGGAGCCAGACTGTAGTACCATGTTGCAAAGCCAGACAACTGAGACTGAGTTACAGACTGCAGACAAGGAGAACCTACCAAGAGAGGAGCATGAATCTACCACCAGTGAGCCAATTAGCCTTGAAAAAGAATGTCACTCTCTTACCACATCAGATCCTCACTTAAATCAGTCTGTTCCTCAGAGTCAAGTAAAACCAGTAGGCACATCCCACTACCAAGAGTTTAATCTAAATGGACCTCCACCTCGAGATCCAGGCTTCAGGACTAGGAGCCGCTGCCAGACCCTTCCACCCAGACAGAGAGGGGATCAACCTGGAGATAGCTCAAGCAGAACCAGCCACTCCACCAGCTTTGTACATTTCAATCAGAACTTTCCTCAAGCAACCAGTGAGCTCTTACAAAATACTCCCACTGTACCTTTACGACCTCGATCTAAAAATCATTCCAGCAAACCACCTTCTAAAACAGAGCTTTCTGGCAGCCAGGTATCAGTGCTGTCCTGCCATCCCTTTAAACCAGAGCTCCAATCAGAAGCACTGCCATGCTCTCCAtcaaaacaggaaataacaaGCAGCCAAAAATCCTTGGCACAGTCACCCTCCAAGCCAGAGCTTTCAGTCAGCCAATCAACAGCATTGCCACGCCCTCCATCCAGACCAGAACTTTCAGTTAGTCGATCTGCTGTACTACCAAGACCCCCGTCCAAACCTGAGCTGATGGGGAGCATTGCAAAAGGACTTCCACTCCAGGATCCAGCTACCAGAACCAAGTCCCGGTGTCAGACTCTTCCTCCCAGACATAGTGGACCTGATACAGTGGAAACCTCACTCAGAACCACCCATTCCACCAGCTTCACAAATATCAACAAAAAGTCATCTCCATCACCCAGTGACGTGACACACAACACCCCTGTGTAAGAAAGATTGGATTGGACAAGGCCAGGTTCTGGTCCAGCCCCCTCCATCAGCTCTCAACCAATCACCTCTTTCAGTGCCAGGAAACCTAGTTGGTGGCACAGTCATCAGATACTTGTCTAAGTTTGAGGATAGGATCATCTGTAAATTGTCATTGAGTCATCATCACAAACTAGTTATCAGTGGTTGTCATTTCGGCACTGTGCAGTAAGTTGAGGTGTGCAAGCGCTGCACTGTGGGGGATTTTTTGGTGATTTACTGAAGTCACCTGATATTGTTAAAATCAGACACAATCAtacatgacatttattttacaaagacaaaaaaatgaactgaaaggAGTCCAATTGTCCCtttttcccacttttttttttggattgaaGATGTATGCAAGATACTTTATGCAAGTCCAAGTCAAGTCCACAAGTCTGAGTCAAGTCTCGAGTCTGTGAGCTGCAAGACTGAGTCAAGCATCAAGTGTCTGAGCAGCAAATCATGTCTTAAATCTGAGCTGCAAGTTGGGGCCAAGTTTCAAGTCTCTGAGCTGCAAATCTCAAATCTCTGAGCTGCAAATCTGAGACAAATCTCAAGTCTCTGATCAGCAAATCTGAGTCAAGTCCTGAATCTCTGATCAGCAAATCTGAGTCAAGTCTTGAGTCTCTGAGCAGCAAGTCCAATTCAAATCTCAAGTCTCTGTGCAGCAAGTCCAAGCCACGCCTCAGATCTCTATACTGCAAGTACAAGCCAAATTTCAATTCTCCAAGCTGCAAGTGTCTGAACTCAGCTCCAAATCAGCTCTCAAGTCTCTAAGCTGCAGATCCGAGACAAGGACCAAGTCTCTGAAATGCAAATCTGAATCAAATCTCAAGGTTTTAAGCTGAAAATTTGAGCCAAGTCTCAATTCTGTGAGCTGCAAGTCTGAGCCACATTTCAAGACTCTAAGCTGCAAGTCTGAGCCACATTTCAAGACTCTAAGATGCAAATCTGAGACAAATCACAAGTCTTTGAGCTGAAGTCTGAGTCAAATTGCAAGTCCCGGAGTTGCCAAAGTCCAAATCTTGTCCCAAGGCAGTCTCTGTGCATTTGGATAGTCCAGTTTATGGGCGTTGATTTTTAGTAGACAATCTATAGTCTATCGGTTTGTCCCTAGTGCTGTCACAAGTTTGAATCCAGCTCATGTGTCCTCTGCTGATTAAATATATGACATGTTGTTGAAAGCTTATAGGCTTATGGTTTATAATTGTCTTGAGATGGCTTGTTTGTGTAGTGTCTAAAGTGGACTATCCACATAAAGTGGCCCCATGGCTTGAACTTGGAACTGTTTCTGTAAAGATGTTTTTCCCTTAACCAAGAGTGTATACTGGATTTGTGGGTCAGAGATGTGTAGCCCTCAGATGTCATAATCATCAGTAGGAATAGGATCTTTTTTCCCTGTACATAAAAGGGATATAATTCATAATGTAAAACCTGacaataagatttttttaaatactgtggAAGTGTAAAAATTCCTTTGAggtataatttataaataaagtgaagAAAATCCTGGAGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127154 lncRNA upstream 105375 30557623 ~ 30562901 (+) True G107591
TU126897 lncRNA upstream 169961 30394495 ~ 30498315 (+) False dnaja2b
TU127204 lncRNA downstream 41115 30728834 ~ 30729657 (+) True G107629
XR_003402817.2 lncRNA downstream 140357 30828076 ~ 30829663 (+) True LOC113526871
TU127253 lncRNA downstream 140381 30828100 ~ 30829657 (+) False LOC113526871
TU127254 lncRNA downstream 160240 30847959 ~ 30848474 (+) True G107657
TU127256 lncRNA downstream 162822 30850541 ~ 30854105 (+) True G107658
XM_034305152.1 mRNA upstream 1551 30628412 ~ 30666725 (+) True vwf
XM_034305153.1 mRNA upstream 10735 30628412 ~ 30657541 (+) False vwf
XM_034305428.1 mRNA upstream 76136 30585783 ~ 30592140 (+) True si:dkey-88e18.2
XM_034305443.1 mRNA upstream 169980 30491642 ~ 30498296 (+) True dnaja2b
XM_034305529.1 mRNA upstream 241821 30410666 ~ 30426455 (+) True lmf2a
XM_034305022.1 mRNA downstream 2216 30689935 ~ 30699382 (+) True cers3b
XM_026913944.2 mRNA downstream 24054 30711773 ~ 30717743 (+) False glipr1b
XM_026913945.2 mRNA downstream 24057 30711776 ~ 30718146 (+) True glipr1b
XM_026913946.2 mRNA downstream 24057 30711776 ~ 30718146 (+) False glipr1b
XM_034305309.1 mRNA downstream 24059 30711778 ~ 30717743 (+) False glipr1b
XR_004578358.1 other upstream 2506407 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 2506407 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 2506407 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 2597591 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 2706505 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile