RNA id: XR_003402825.2


Basic Information

Item Value
RNA id XR_003402825.2
length 1118
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC113526961
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28430003 ~ 28448635 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCACAGGTTGAAAAGGAAAGTGAAGCCAGAACCCCCACAGAGCGAACAAGAACTGAAAATATCTACAGTAAAGTAATACCTGACGTGGACCTGTCACCTTTACATCCTCTTTAAACAGTCAGTAAAACACAATGTGTTGAGAATGTTGTGTAATACATCGCTAGCTGTGTTATCCTGATGCTGATCTTCTGCGCACACATGGGGCTGCTGATATGATGTTGAGTAACCCTGcttatttttCAGCAACACTGGGAGCAAAGTTACAGAATTCACCATGGACTAGATTGGTCAAAATTAATTCGGGAGAGGACGGGATTGCTGGAAATTCCTTCGGGAGAGGACAGGATTGGTTGAAATTCCTTCTTGAGAGGACGGGATTTGTCCaaattccttcaggagtggaCGGGATTGGTCAGGTGTGTCTGTGGGATTGGGCAACAGTGTCTGCAGGAGAATGGGTGATGGGTGATATGACGAAACATcatcgatattgtgataaattatgttgcaatatattttttatttaattacaaactgatcTGAAGGAGCTGAGTTGATATTAAACTGTattgtacttaatctttaaaatttttgaatgttaaaatacaaatttaaaaaaatttcaatctAAAACAAAcaccaatttttatttaattttttttatgtaacacTACAGTTTTGCTGGCATGTATATTGTGATACACATCATGTATTTTAGAAAAGTCTTCAAGAATcttgatatgatttttttttttttttaatcatatcacCCACTCATATCCAGAAGAAGGCAAGATTGTTTAAGGATCAGTCGCAATTCCTGGAGtggggtaaaaataaaaaaaattttaaaaagtcccAGGCACTCCTGTAACCTGAACCACATTAAAAAGGTTCTTCTCAACATGGAGAAGCAGCAGCTCTACTCTGAGCTCCAGAAAGCCGCCCCTCTTATCAAGGATCTTCAACTCTCTGGCTACAGTTCTCTAATGGAGAAGGATGGAATGCCTCTGGCTCTTATTAATGAGTGATGGGAGGAAGGAGGATGAGATTAATCACAGGTTATAGAACACACTCACAGTAGTGAAGACACAGCTGAGCCATTAAGGCAGAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578326.1 lncRNA upstream 185135 28233807 ~ 28244868 (+) True LOC117597547
XR_004578327.1 lncRNA upstream 185135 28233807 ~ 28244868 (+) False LOC117597547
TU125760 lncRNA upstream 332002 28097729 ~ 28098001 (+) True G106343
TU125500 lncRNA upstream 700842 27726402 ~ 27729161 (+) True G106118
TU125432 lncRNA upstream 827269 27602158 ~ 27602734 (+) True G106064
TU125977 lncRNA downstream 120835 28569470 ~ 28571760 (+) True G106531
TU125973 lncRNA downstream 124044 28572679 ~ 28573466 (+) True G106527
TU125975 lncRNA downstream 127354 28575989 ~ 28577269 (+) True G106529
TU125968 lncRNA downstream 129724 28578359 ~ 28584800 (+) True G106522
TU125993 lncRNA downstream 147732 28596367 ~ 28597554 (+) True G106547
XM_026913720.2 mRNA upstream 206499 28215787 ~ 28223504 (+) True mthfsd
XM_026913719.2 mRNA upstream 206499 28215789 ~ 28223504 (+) False mthfsd
XM_026914070.2 mRNA upstream 214921 28206753 ~ 28215082 (+) True gas8
XM_026913727.2 mRNA upstream 248800 28163685 ~ 28181203 (+) True LOC113526563
XM_026914254.2 mRNA upstream 268134 28150881 ~ 28161869 (+) False def8
XM_026913332.2 mRNA downstream 4425 28453060 ~ 28460177 (+) True emc8
XM_026914363.2 mRNA downstream 13194 28461829 ~ 28467750 (+) False gins2
XM_026914362.2 mRNA downstream 13197 28461832 ~ 28467750 (+) True gins2
XM_026914287.2 mRNA downstream 293400 28742035 ~ 28750741 (+) True cibar2
XM_034305423.1 mRNA downstream 293400 28742035 ~ 28750741 (+) False cibar2
XR_004578358.1 other upstream 268134 28146263 ~ 28161869 (+) False def8
XR_004578357.1 other upstream 268134 28146263 ~ 28161869 (+) False def8
XR_004578359.1 other upstream 268134 28146263 ~ 28161869 (+) False def8
TU125683 other upstream 359318 28066912 ~ 28070685 (+) True uraha
TU125656 other upstream 468232 27959525 ~ 27961771 (+) False LOC113526832

Expression Profile