RNA id: XR_004578305.1


Basic Information

Item Value
RNA id XR_004578305.1
length 2489
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC117597522
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16751007 ~ 16755979 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tagaacaggagattcacagcatgaaagtgcacctgaaaaatctgcaggaattgtgtgaagtaatcatgtcaacatgggcCAGAATCTCAGAGGAATGTTTCCATCATCTTGTGGAACCCATATCATGAAGAATtaaggctgttttgagagcaaatgGAGGCCCCACAAAGTATTAGCGTAGTGTGCTCAGTAAGTGTATGTGATATGTCAGATGAACACTTGGGGTGAGTGATGGATAAACATGATACGGtgtctgttttcagtttttgataATGTGGGCCCAGGTTGAGACATCTTTTTCTGTGGTGGACCTTGAAAGTGAACTGCTGCAACCTCAGAGTCCATCGGGTCAGACGCGAGAAGGTCTTGGGGCAGTCGAATGCCCAGGCGAAGGGCCGCATGGTAGGTGAAGACCTCAAATTCCCTCACTTCTAGGTAGTGTCTCTACTTTTCCACTGCGCATACCACCGCTAAACACTTCATTTCAATGCCTTTGATGCATAAGCTATAGCTTGATCTCCTTCTGTAGAATGCTGCGTAAGAATGGCTCCCAGTCCAACTTTGCTTGTGTGGACCTGGAAAGTCTGGACAAGGTTAGGCTGGGCAAGAACTGGTGAATCTTGAAGGGCCTGCTTTAGGGCATCCATGCTGGCTTGGCATTTGTATGTCCATTCCTATTTAACTCCCTTCTTCTTTAAGTGGTTCAAAGGAGTTGCAATGTACGCAAAATGGGGAATGAATTTGTGATACCAGCCAGCCAAGCCTCAAAGCACTCAAAGATCATTTGGCAGAGAGAAATCGTCAGTGGTCTTCTCCGTATTGACCTCTACCCCCTTTTCCAGTGATTCGAGGACATCATGTGTGAGTGGCATTGAGTAAGCATTTGGGATGGTCTTACTGTTGAGCCTCCTGTAATTGACGCATAAGGCACGAGGACCACCGGGGATGACCATGGAGAGAGAGGGCTCGATGATATTTTCTTGGAGCATTCTGTCCACCTGGtcttcagttattttatttcgAAAGATGAGACTATAGGCTCTGCATTTACTTGGTATGTTGTCAGAGGGcgattttgtgtttttccacaGCTGTACGACCCAAGACACCGGAGGTGGAACAAGGCCAGGACAACATCAACTTCTGTAGCTCCTCCAGGGTATCAGAATTCTAGATTGGAAAACCTTTATGAGTTATGAAAGTTAGACATGGGAACAAAAGAGTAGGACATAAGGTGTAGTAGAGATTCACAATGAcaggatggagggaaagagcGCCTGCTGTTGTTTCGGGCCCAGGGTTCCCTGGGATGGAAGGAACAGATGTCTTCAGTCCTTTGCAGCCACCTCTGACATCTAGGATAACCCCAAAGGAACCAAGGAAGTCTATGAGAGGGAACACCAGGCTCTCCTGCATCAAGATGTAGGTGCTACCAGTGTCCAGCACTGCTTTCATCTCCTTCCCTTTCACCATCACAGGCACCAGGAGTAGTGTTGTGACATCACGATGTTGGGCTATGGAAACTCCCGCAAGCTTTTTGGAGCAACTATGGTCAGATGGCTTCTTACTGGTCTTATCTTTACTACTCTGATTTCCCACCTTCTGCTAATAGTCTTTTGCTCCCATGCATTCCTTCTCAACCGTGGATCCAATTTTCATCAACTGTTCCAGTGTGTTCACTGCCCCTCTCAGGTAGCCAGCGACCCTTGGGTTGATGTTATTGAGTATGCGGCTCATCACTTTCTCCTCTGAGATGTCAAGGCTTCCACAGAGGGCAGAGACAGAGGGCTCTGTAATCTGTGAAATCTCTCAGGTGTTGACTCAGCTGCTGTACAAGACTCCTCAGCTTATCCTGCACTTCAGAAAACTCAGAGCAGGTCATCTCAGCACTGTACTCAAGGTTCCCATGAGCTCCACACTGGGTAGGGGCCTGATATCCAGGAAGTTTTACCATTGCTCAATAAAGTTGGGCACATCTGCCATCTCACAAGAGTCACTGAAGGAGGGGAACTCCAGTCAGATGGGAGCTCGAACACAGAATGAGGATGCCCCAGCTCCAGCTGAGGATGAGAGGGTGTTATAGAGTTGAATGTCAGCAGTTGGATTGATGTCATATGAGGCAGCTGAAGACTTATGTTGTGGAATTTTATCTCTAGGCGCAGGCACCGGAGTTTTGGGAGAATTAACGAAAGAAATGTGAGGTAGCTGGGGTGTAAGAATGTAATCTGGTGAGTGTAGGGATAATAGTCTCtctgattttcttcttctgaCTCCCCCATTTAGCATCTCTCCACAGGAAACAATCTATAGCCACTCCCTCCAGTTTGTCCAGGGACCATTCAAAATAGTCCTCCATCTGAGCTATGCTAGCATCCACTACCTCCCTGAGACTGGTTTTGTGGTTAAGCGTACTGCTGATGAATTGTTTGAAGTTTCTGTCTAGCTTTTATACATGTTCTCTAAGGGCCAATAAATCCACCTTAAGTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118934 lncRNA upstream 72441 16679970 ~ 16680793 (+) False rgma
TU118961 lncRNA upstream 83209 16669387 ~ 16670025 (+) True G100355
TU118947 lncRNA upstream 168414 16584344 ~ 16584820 (+) True G100341
TU118946 lncRNA upstream 169287 16583621 ~ 16583947 (+) True G100340
TU118897 lncRNA upstream 434511 16318273 ~ 16318723 (+) True G100301
TU118966 lncRNA downstream 2160 16758139 ~ 16758343 (+) True G100360
TU118968 lncRNA downstream 4332 16760311 ~ 16760534 (+) True G100362
TU118977 lncRNA downstream 66389 16822368 ~ 16823102 (+) True G100370
TU118986 lncRNA downstream 182756 16938735 ~ 16939728 (+) True G100379
TU119104 lncRNA downstream 215851 16971830 ~ 16972238 (+) True G100480
XM_026927763.2 mRNA upstream 72699 16657601 ~ 16680535 (+) True rgma
XM_034305372.1 mRNA upstream 242255 16500760 ~ 16510979 (+) True LOC113534621
XM_034305369.1 mRNA upstream 493061 16259445 ~ 16260173 (+) True LOC113534692
XM_026927790.2 mRNA upstream 897122 15812514 ~ 15856112 (+) True mctp2a
XM_034305540.1 mRNA upstream 944118 15723423 ~ 15809116 (+) False mef2aa
XM_026927242.2 mRNA downstream 8716 16764695 ~ 16816272 (+) True slco3a1
XM_026927243.2 mRNA downstream 8716 16764695 ~ 16814449 (+) False slco3a1
XM_034305391.1 mRNA downstream 82896 16838875 ~ 16928642 (+) True srpra
XM_034305393.1 mRNA downstream 82897 16838876 ~ 16928642 (+) False srpra
XM_034305394.1 mRNA downstream 82897 16838876 ~ 16928642 (+) False srpra
TU118951 other upstream 152167 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 403447 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 1407266 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2228754 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 2712452 14035230 ~ 14040782 (+) False skor1b
XR_004578324.1 other downstream 644447 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 733567 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 1791946 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1795467 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1842735 18598714 ~ 18599375 (+) True G101419

Expression Profile