RNA id: XR_004578316.1


Basic Information

Item Value
RNA id XR_004578316.1
length 687
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC117597540
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17038051 ~ 17039276 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGAAGGCaatggggagaacaaagAGTGCCCATGGAGAACTGATATACAGGGATGTCAGCTGCTTGTGCACAACAACACAAAATCTGAACTGTGGGTGCTTTAATGCAAAGCATTTCAAGTTCCACATTCAGCAGACAGCTCCCATGGCTCCCACAATGACAGAAGTTCAGTGGCCTTGAAGTTGTTGGCAAATGGTGTGTGCTGAAGTATGATGGTGATCTATACCCTGGTGTCATCACAGATACAAGTGAAACACATATTGAGGTCCGTTGCATGCAAAAGATTGGATTCAACAGGTTTTTCTGGCCAGCCCATGAAGACATCCTTTGGTACTTGTTTGAGGACATTGTGTGTATCATCCCTCCCCCGAGGCCAGTCACAGGTCGTCACATGGAAATTGACAGAGAAATCTGGGCCAAACTGCAGAAGTCTTCTTAGAAAGGGAGCCAGAAGCACCCACGGATGCTGACGGAAAGGACATAGTTCCACCACATTCTCAATCtttgttctctctgtttctccctctttctcttcttctctttccatcTTGATTGTGATGGACTACATGGACATAACACATTCCTtcagaaatctctctctctcacacacaggctatgtacacacatgcacacacacaaacgcacacagaGTGTCTGGATATTCATTCCTGTTACGCACTGTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119131 lncRNA upstream 13823 17010715 ~ 17024228 (+) True G100499
TU119104 lncRNA upstream 65813 16971830 ~ 16972238 (+) True G100480
TU118986 lncRNA upstream 98323 16938735 ~ 16939728 (+) True G100379
TU118977 lncRNA upstream 214949 16822368 ~ 16823102 (+) True G100370
TU118968 lncRNA upstream 277517 16760311 ~ 16760534 (+) True G100362
TU119127 lncRNA downstream 48678 17087954 ~ 17090706 (+) True G100495
TU119167 lncRNA downstream 111677 17150953 ~ 17152232 (+) True G100532
TU119168 lncRNA downstream 115430 17154706 ~ 17154971 (+) True G100533
TU119180 lncRNA downstream 136882 17176158 ~ 17176370 (+) True G100544
TU119380 lncRNA downstream 450870 17490146 ~ 17493002 (+) False LOC113539654
XM_026935710.2 mRNA upstream 54075 16978935 ~ 16983976 (+) True ppp1r15b
XM_034305391.1 mRNA upstream 109409 16838875 ~ 16928642 (+) True srpra
XM_026935369.2 mRNA downstream 2081 17041357 ~ 17065819 (+) True blm
XM_026935368.2 mRNA downstream 2084 17041360 ~ 17065819 (+) False blm
XM_026935366.2 mRNA downstream 2093 17041369 ~ 17065819 (+) False blm
XM_026935370.2 mRNA downstream 2093 17041369 ~ 17065819 (+) False blm
XM_026935367.2 mRNA downstream 2093 17041369 ~ 17065819 (+) False blm
TU118951 other upstream 436984 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 688264 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 1692083 15300482 ~ 15345968 (+) False carmil2
TU117779 other upstream 2513571 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 2997269 14035230 ~ 14040782 (+) False skor1b
XR_004578324.1 other downstream 361150 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 450270 17489546 ~ 17493092 (+) False LOC113539654
XR_004578373.1 other downstream 1508649 18547925 ~ 18548289 (+) True LOC117597608
TU120088 other downstream 1512170 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 1559438 18598714 ~ 18599375 (+) True G101419

Expression Profile