Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578327.1 |
| length | 579 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 3 |
| gene id | LOC117597547 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 28233807 ~ 28244868 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU125760 | lncRNA | upstream | 135806 | 28097729 ~ 28098001 (+) | True | G106343 |
| TU125500 | lncRNA | upstream | 504646 | 27726402 ~ 27729161 (+) | True | G106118 |
| TU125432 | lncRNA | upstream | 631073 | 27602158 ~ 27602734 (+) | True | G106064 |
| TU125360 | lncRNA | upstream | 688290 | 27543059 ~ 27545517 (+) | False | ddx11 |
| TU125340 | lncRNA | upstream | 735177 | 27498431 ~ 27498630 (+) | True | G105981 |
| TU125917 | lncRNA | downstream | 145330 | 28390198 ~ 28450197 (+) | True | G106477 |
| XR_003402825.2 | lncRNA | downstream | 185135 | 28430003 ~ 28448635 (+) | True | LOC113526961 |
| TU125977 | lncRNA | downstream | 324602 | 28569470 ~ 28571760 (+) | True | G106531 |
| TU125973 | lncRNA | downstream | 327811 | 28572679 ~ 28573466 (+) | True | G106527 |
| TU125975 | lncRNA | downstream | 331121 | 28575989 ~ 28577269 (+) | True | G106529 |
| XM_026913720.2 | mRNA | upstream | 10303 | 28215787 ~ 28223504 (+) | True | mthfsd |
| XM_026913719.2 | mRNA | upstream | 10303 | 28215789 ~ 28223504 (+) | False | mthfsd |
| XM_026914070.2 | mRNA | upstream | 18725 | 28206753 ~ 28215082 (+) | True | gas8 |
| XM_026913727.2 | mRNA | upstream | 52604 | 28163685 ~ 28181203 (+) | True | LOC113526563 |
| XM_026914254.2 | mRNA | upstream | 71938 | 28150881 ~ 28161869 (+) | False | def8 |
| XM_026913332.2 | mRNA | downstream | 208192 | 28453060 ~ 28460177 (+) | True | emc8 |
| XM_026914363.2 | mRNA | downstream | 216961 | 28461829 ~ 28467750 (+) | False | gins2 |
| XM_026914362.2 | mRNA | downstream | 216964 | 28461832 ~ 28467750 (+) | True | gins2 |
| XM_026914287.2 | mRNA | downstream | 497167 | 28742035 ~ 28750741 (+) | True | cibar2 |
| XM_034305423.1 | mRNA | downstream | 497167 | 28742035 ~ 28750741 (+) | False | cibar2 |
| XR_004578358.1 | other | upstream | 71938 | 28146263 ~ 28161869 (+) | False | def8 |
| XR_004578357.1 | other | upstream | 71938 | 28146263 ~ 28161869 (+) | False | def8 |
| XR_004578359.1 | other | upstream | 71938 | 28146263 ~ 28161869 (+) | False | def8 |
| TU125683 | other | upstream | 163122 | 28066912 ~ 28070685 (+) | True | uraha |
| TU125656 | other | upstream | 272036 | 27959525 ~ 27961771 (+) | False | LOC113526832 |
