RNA id: XR_004578347.1


Basic Information

Item Value
RNA id XR_004578347.1
length 1342
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC117597584
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25340623 ~ 25342308 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACATGCACTGGTATAATTTTTCACAGGGGAGTCAGAGCATCTGTATTCAGCATACATGTAACATAGTGCTTTGTCTGGTAAAAGTAACAGTGATGCAACACAAGCATCAGCAGCAGGGATATATCTAAGACTCACCTGCTTTTCATGTGATCTGACGTGTACAATGGAACCCAGCTGTGGAAAAGGTTAGGGCTTGCTCATTACAATGTGGACCCACTCAAAAATGAAAAGCTGTTAATTAAATTAGCAGATATCCCAGCTAAGAATAGCAGAATCAGCAGTAAACAATGTGTGGTATGAACGTGGAGAACTCTTAAAAAACAGAGTGAGAACCATCTCAATGAAGTATGTGATAAATATTAAGTACATAGCATGGATGAGGTCACCGGCACCATGAGAAAAGTGTTCCCAGAACCTGTAGAAGTGTACATATGTCCaaagtacaaaaacaaaaacaaacaaacaaaaaaacccagctaCTCAGATTTACAAGTGCGACTACGAGTCAgtagtgttttaaaataatgctcATAACACCAATgtagaatgaaaataaaaggagGATAGCCTTGGAGGACACCTGCAGCGCGTGTAGACAAGAGTTGCGAGCTGCTAGCGCAGAGCTCTGCAACATGTTCATGTAGACGTTTCCTGtgggtgtccatgtgggtttcctctggttacatcccacctcccagaaacatgcagCCACCAGATGTCTCTCAAGTTCTTGAGTATGTCCTATTCCTTAGATGTTTGGATCTTCCCCAAAAGTTGGCTTTTGAATACTGCAAACAGATGGAGTCCATGCAGAGGATAAACAGGCTTGGGAAACACTAATGATAAAATGATGTGAACGCTTTTTCAGTTCTATGCAAGGTCATAACACAGGCTTGAATCTTATTAATTAAGATATGATAACCATACTAATGAATTTCACAGTTCCTGGCACATCACAGGGTCTGTTTACAATgtcatatttttgaaaaatgataaTTCTGTTAAACAGTATATTCAGCAGCAGGGCATGCTTTGTTTTATTAGAGAGATTGCTCGAATTTTCTTTAAACTGGCTTTATAATTAAGTGGGTTGATCTTAGCCTTAAACAGTgtgttaaaaatgtagaaataggATCTATGGTACATATAGCAccatgtgtgattgtgtgatgtgtgaacAACTACTTATTTTACTACAATTTCCTAGAATTAAGCATTTTGAGtttgccctctagtggtcaACTGATCAACTgtatattactttatttttgtctgtctgaGCTGCCATACCACATCAAAAGGATTCTTTCACATAacttcattaataatttaacaatcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123977 lncRNA upstream 36219 25294899 ~ 25304404 (+) False G104781
TU123980 lncRNA upstream 36219 25294899 ~ 25304404 (+) False G104781
TU123938 lncRNA upstream 94758 25245664 ~ 25245865 (+) True G104751
TU123930 lncRNA upstream 96745 25243481 ~ 25243878 (+) True G104748
TU123921 lncRNA upstream 97318 25242800 ~ 25243305 (+) True G104739
TU124338 lncRNA downstream 561518 25903826 ~ 25905288 (+) True G105118
TU124552 lncRNA downstream 977701 26320009 ~ 26323500 (+) True G105320
TU124687 lncRNA downstream 1171128 26513436 ~ 26516780 (+) True G105446
TU124691 lncRNA downstream 1183612 26525920 ~ 26527807 (+) True G105450
TU124690 lncRNA downstream 1189027 26531335 ~ 26532088 (+) True G105449
XM_026914471.2 mRNA upstream 58403 25268893 ~ 25282220 (+) True yif1b
XM_034305489.1 mRNA upstream 58994 25268893 ~ 25281629 (+) False yif1b
XM_026914476.2 mRNA upstream 58994 25268893 ~ 25281629 (+) False yif1b
XM_034305490.1 mRNA upstream 58994 25268893 ~ 25281629 (+) False yif1b
XM_026914473.2 mRNA upstream 58994 25268893 ~ 25281629 (+) False yif1b
XM_026914414.2 mRNA downstream 425110 25767418 ~ 25777506 (+) True dusp8b
XM_034305191.1 mRNA downstream 446330 25788638 ~ 25839289 (+) True mob2b
XM_026913866.2 mRNA downstream 446330 25788638 ~ 25839289 (+) False mob2b
XM_026913867.2 mRNA downstream 446330 25788638 ~ 25839289 (+) False mob2b
XM_026913863.2 mRNA downstream 473533 25815841 ~ 25839289 (+) False mob2b
TU123982 other upstream 25410 25294899 ~ 25315213 (+) False G104781
TU123976 other upstream 33812 25294899 ~ 25306811 (+) True G104781
TU122935 other upstream 1598308 23739502 ~ 23742315 (+) False cstf3
TU122865 other upstream 1710900 23615103 ~ 23629723 (+) True G103830
XR_003402830.2 other upstream 2066114 23274359 ~ 23274509 (+) True LOC113527008
TU124829 other downstream 1488670 26830978 ~ 26833427 (+) True G105569
TU125244 other downstream 1869081 27211389 ~ 27214570 (+) True G105898
trnal-caa_8 other downstream 2216528 27558836 ~ 27558946 (+) True trnal-caa_8
trnal-caa_9 other downstream 2218079 27560387 ~ 27560497 (+) True trnal-caa_9
XR_003402810.2 other downstream 2602482 27944790 ~ 27966308 (+) True LOC113526832

Expression Profile