RNA id: XR_004578373.1


Basic Information

Item Value
RNA id XR_004578373.1
length 179
RNA type ncRNA
GC content 0.50
exon number 3
gene id LOC117597608
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18547925 ~ 18548289 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGAGACGGAGATTAGTCAGTAAGACAGCGTCTCTAGTGAAGCGATTATTTACAGATTCAGTCGAATCACCCGCGTGTTCAACCAGGGAATGGGGTCGTGGATCTCAAAGCGTGATTAAcgagacCGAAGCAGAGACCGAATCGGATAACGGCCCAGAACCGAATCAGGAAGCAGAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578374.1 lncRNA upstream 2259 18545172 ~ 18545666 (+) True LOC117597609
TU120073 lncRNA upstream 10116 18537586 ~ 18537809 (+) True G101388
TU120072 lncRNA upstream 10816 18536901 ~ 18537109 (+) True G101387
XR_004578363.1 lncRNA upstream 189834 18349124 ~ 18358091 (+) True LOC117597601
XR_004578362.1 lncRNA upstream 189838 18349124 ~ 18358087 (+) False LOC117597601
TU120087 lncRNA downstream 756 18549045 ~ 18549253 (+) True G101402
TU120096 lncRNA downstream 20709 18568998 ~ 18569765 (+) True G101411
TU120102 lncRNA downstream 49202 18597491 ~ 18597706 (+) True G101417
TU120107 lncRNA downstream 53633 18601922 ~ 18602186 (+) True G101422
TU120121 lncRNA downstream 194791 18743080 ~ 18743291 (+) True G101436
XM_026932801.2 mRNA upstream 306316 18224061 ~ 18241609 (+) True cd81b
XM_026932717.2 mRNA upstream 359441 17761517 ~ 18188484 (+) True reln
XM_026932718.2 mRNA upstream 359441 17761517 ~ 18188484 (+) False reln
XM_034305510.1 mRNA upstream 359441 17761883 ~ 18188484 (+) False reln
XM_034305511.1 mRNA upstream 378656 17761517 ~ 18169269 (+) False reln
XM_026932450.2 mRNA downstream 133228 18681517 ~ 18732814 (+) True idh2
XM_034304954.1 mRNA downstream 409139 18957428 ~ 19122497 (+) True sema4ba
XM_026913484.2 mRNA downstream 409139 18957428 ~ 19122497 (+) False sema4ba
XM_026914192.2 mRNA downstream 611697 19159986 ~ 19239977 (+) False zgc:162879
XM_026914191.2 mRNA downstream 611708 19159997 ~ 19239977 (+) True zgc:162879
XR_003403945.2 other upstream 1054833 17489546 ~ 17493092 (+) False LOC113539654
XR_004578324.1 other upstream 1104457 17400426 ~ 17443468 (+) False LOC117597546
TU118951 other upstream 1946858 16600257 ~ 16601067 (+) True G100345
TU118902 other upstream 2198138 16349457 ~ 16349787 (+) True G100306
XR_004578337.1 other upstream 3201957 15300482 ~ 15345968 (+) False carmil2
TU120088 other downstream 3157 18551446 ~ 18551724 (+) True G101403
TU120104 other downstream 50425 18598714 ~ 18599375 (+) True G101419
TU120119 other downstream 190054 18738343 ~ 18739998 (+) True G101434
TU120151 other downstream 245346 18793635 ~ 18794273 (+) True G101466
XR_004578298.1 other downstream 409139 18957428 ~ 19121126 (+) False sema4ba

Expression Profile