RNA id: trnak-cuu_22


Basic Information

Item Value
RNA id trnak-cuu_22
length 73
RNA type tRNA
GC content 0.62
exon number 1
gene id trnak-cuu_22
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23163107 ~ 23163179 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122322 lncRNA upstream 14291 23140847 ~ 23148816 (+) False relt
TU122293 lncRNA upstream 56866 23106142 ~ 23106241 (+) True G103327
TU122297 lncRNA upstream 156467 23000367 ~ 23006640 (+) True G103331
TU122270 lncRNA upstream 179610 22942709 ~ 22983497 (+) False LOC113526422
TU122267 lncRNA upstream 263670 22899063 ~ 22899437 (+) True G103301
TU122343 lncRNA downstream 12372 23175551 ~ 23259191 (+) False LOC113526573
TU122349 lncRNA downstream 23973 23187152 ~ 23187663 (+) True G103376
TU122607 lncRNA downstream 252316 23415495 ~ 23416103 (+) True G103606
TU122692 lncRNA downstream 382938 23546117 ~ 23546390 (+) True G103688
TU122709 lncRNA downstream 409372 23572551 ~ 23575616 (+) False serp1
XM_026914305.2 mRNA upstream 14235 23113084 ~ 23148872 (+) True relt
XM_026914310.2 mRNA upstream 14235 23113084 ~ 23148872 (+) False relt
XM_026914306.2 mRNA upstream 14235 23113084 ~ 23148872 (+) False relt
XM_026914308.2 mRNA upstream 14235 23113084 ~ 23148872 (+) False relt
XM_026914307.2 mRNA upstream 14235 23129190 ~ 23148872 (+) False relt
XM_026913749.2 mRNA downstream 467 23163646 ~ 23259257 (+) True LOC113526573
XM_026913750.2 mRNA downstream 468 23163647 ~ 23259257 (+) False LOC113526573
XM_026913480.2 mRNA downstream 97443 23260622 ~ 23267820 (+) True LOC113526446
XM_034305398.1 mRNA downstream 97443 23260622 ~ 23264135 (+) False LOC113526446
XM_026914322.2 mRNA downstream 106914 23270093 ~ 23274655 (+) True rps3
TU122269 other upstream 181957 22952677 ~ 22981150 (+) False LOC113526422
TU122021 other upstream 1368438 21787116 ~ 21794669 (+) False zbbx
XR_003402807.2 other upstream 2065266 21026027 ~ 21097841 (+) False LOC113526807
TU120293 other upstream 4039230 19122612 ~ 19123877 (+) True G101602
XR_004578298.1 other upstream 4041981 18957428 ~ 19121126 (+) False sema4ba
XR_003402832.2 other downstream 108879 23272058 ~ 23272208 (+) True LOC113527010
XR_003402831.1 other downstream 110129 23273308 ~ 23273458 (+) True LOC113527009
XR_003402830.2 other downstream 111180 23274359 ~ 23274509 (+) True LOC113527008
TU122865 other downstream 451924 23615103 ~ 23629723 (+) True G103830
TU122935 other downstream 576323 23739502 ~ 23742315 (+) False cstf3