RNA id: TU146884


Basic Information

Item Value
RNA id TU146884
length 769
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G124385
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20663 ~ 28910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attttttttacacaataattTTGCCAGATGgataaaaagacataaaaatgtGAAACCTCCATCTGATTAATGTTCATAGAGAGCGAAAAtcagataaaaatatatttatttttatatttttagtttctCTCTATGAAGGTTAATAAAATtctgcattaaaatgtaaaaacatctttttttttttaattgtttacttTGTCTTTATTTGAAGTGACaagttaacatttatttagaattaaatttaataaaatcatttgattttgctttaatattaatttttaatttttgtgatgttcagtgttaagaatttttaattacacttaaattcagtgatttaatttttattttttcagtaattaTATATTCACACGGAGATGCTAACGATGCATTAACGAGCTAATTATCGCTAATTCACGCCAAGTTTAGCAAAATTTCTAGCGTGTTAATTAAACATGCTAATTAGTGCAGTGCAGAATGTGTGTAATTAGCAAGTTTGCTAATGATCTAGCGGAGTTAGCagatgtgtgtacatgtgtaatACCTgctgtaaacaacaacaacaacacttcagcacaacaacaacaacaacaacacattattatttaaaaacactgttaaaaGAGTTCAGTAGAGATTTATATCACTGAGGTCTGAGTGCGAATAATTTCATTCACCTTACAGCTAAtaattcttacacacacacacacacacacacacacacacacacacacacactctcacactaacacacacacacacacacactggt

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146888 lncRNA upstream 3830 14899 ~ 16833 (+) True G124387
TU146889 lncRNA upstream 5152 13994 ~ 15511 (+) False G124387
TU146907 lncRNA downstream 14838 43748 ~ 43957 (+) True G124397
TU146908 lncRNA downstream 18410 47320 ~ 47548 (+) True G124398
TU146911 lncRNA downstream 23938 52848 ~ 54183 (+) True G124400
XR_004578550.1 lncRNA downstream 25376 54286 ~ 57248 (+) True LOC117597791
TU146921 lncRNA downstream 45132 74042 ~ 76052 (+) True G124405
XM_034306289.1 mRNA upstream 25 112 ~ 20638 (+) True ipo11
XM_034306570.1 mRNA downstream 187251 216161 ~ 217382 (+) True LOC117597813
XM_034306571.1 mRNA downstream 232489 261399 ~ 264259 (+) True LOC117597814
XM_034306644.1 mRNA downstream 305993 334903 ~ 341086 (+) True fpgt
XM_034306641.1 mRNA downstream 313752 342662 ~ 366781 (+) True tnni3k
XM_034306643.1 mRNA downstream 313752 342662 ~ 366781 (+) False tnni3k
TU146892 other upstream 7258 12688 ~ 13405 (+) False G124387
TU146909 other downstream 20068 48978 ~ 51072 (+) True G124399
TU146916 other downstream 41163 70073 ~ 86083 (+) True G124403
TU146973 other downstream 148752 177662 ~ 178417 (+) True G124442
TU147002 other downstream 243507 272417 ~ 330399 (+) True G124462
TU147050 other downstream 370846 399756 ~ 407434 (+) True G124498

Expression Profile