RNA id: TU146893


Basic Information

Item Value
RNA id TU146893
length 280
lncRNA type intronic
GC content 0.45
exon number 3
gene id G124387
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12688 ~ 23292 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGTTTGTTCCGTTttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgttttgtagcgtttgttccgttttgtagcgtttgttccgtgttctagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146898 lncRNA downstream 2595 18106 ~ 25966 (+) True G124388
TU146884 lncRNA downstream 5152 20663 ~ 28910 (+) True G124385
TU146907 lncRNA downstream 28237 43748 ~ 43957 (+) True G124397
TU146908 lncRNA downstream 31809 47320 ~ 47548 (+) True G124398
TU146911 lncRNA downstream 37337 52848 ~ 54183 (+) True G124400
XM_034306570.1 mRNA downstream 200650 216161 ~ 217382 (+) True LOC117597813
XM_034306571.1 mRNA downstream 245888 261399 ~ 264259 (+) True LOC117597814
XM_034306644.1 mRNA downstream 319392 334903 ~ 341086 (+) True fpgt
XM_034306641.1 mRNA downstream 327151 342662 ~ 366781 (+) True tnni3k
XM_034306643.1 mRNA downstream 327151 342662 ~ 366781 (+) False tnni3k
TU146892 other upstream 589 12688 ~ 13405 (+) False G124387
TU146909 other downstream 33467 48978 ~ 51072 (+) True G124399
TU146916 other downstream 54562 70073 ~ 86083 (+) True G124403
TU146973 other downstream 162151 177662 ~ 178417 (+) True G124442
TU147002 other downstream 256906 272417 ~ 330399 (+) True G124462
TU147050 other downstream 384245 399756 ~ 407434 (+) True G124498

Expression Profile