RNA id: TU146907


Basic Information

Item Value
RNA id TU146907
length 210
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G124397
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 43748 ~ 43957 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTAAATTCAGTAAACATATCAACAGTATACAGCGATTTACAGTGGAGGGGATAAGCAGCAAGTTCATTAACACCTGGGTCAAAGACGAAATATTCTACAGAGTTTCATTACGTCCCTGGACACTGCTATCGAACAGTGAGTGTGacatataatgtttataataaagttCATTCTAGTTcagaacaaataaaattttaaaaatactaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146884 lncRNA upstream 14838 20663 ~ 28910 (+) True G124385
TU146898 lncRNA upstream 17782 18106 ~ 25966 (+) True G124388
TU146887 lncRNA upstream 20456 14899 ~ 23292 (+) False G124387
TU146888 lncRNA upstream 26915 14899 ~ 16833 (+) True G124387
TU146889 lncRNA upstream 28237 13994 ~ 15511 (+) False G124387
TU146908 lncRNA downstream 3363 47320 ~ 47548 (+) True G124398
TU146911 lncRNA downstream 8891 52848 ~ 54183 (+) True G124400
XR_004578550.1 lncRNA downstream 10329 54286 ~ 57248 (+) True LOC117597791
TU146921 lncRNA downstream 30085 74042 ~ 76052 (+) True G124405
XR_004578632.1 lncRNA downstream 50090 94047 ~ 96304 (+) True LOC117597868
XM_034306289.1 mRNA upstream 23110 112 ~ 20638 (+) True ipo11
XM_034306570.1 mRNA downstream 172204 216161 ~ 217382 (+) True LOC117597813
XM_034306571.1 mRNA downstream 217442 261399 ~ 264259 (+) True LOC117597814
XM_034306644.1 mRNA downstream 290946 334903 ~ 341086 (+) True fpgt
XM_034306641.1 mRNA downstream 298705 342662 ~ 366781 (+) True tnni3k
XM_034306643.1 mRNA downstream 298705 342662 ~ 366781 (+) False tnni3k
TU146892 other upstream 30343 12688 ~ 13405 (+) False G124387
TU146909 other downstream 5021 48978 ~ 51072 (+) True G124399
TU146916 other downstream 26116 70073 ~ 86083 (+) True G124403
TU146973 other downstream 133705 177662 ~ 178417 (+) True G124442
TU147002 other downstream 228460 272417 ~ 330399 (+) True G124462
TU147050 other downstream 355799 399756 ~ 407434 (+) True G124498

Expression Profile