RNA id: TU146921


Basic Information

Item Value
RNA id TU146921
length 308
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G124405
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 74042 ~ 76052 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaacgcggatcagagcgtagtgtctgtagagacgtgaacgcggatcagagcgtagtgtctgtagagacgtgaacgcggatcagagtgtagtgtctgtagagacgtgaacgcggatcagagcgtagtgtctgtagagacgtgaacgcggatcagagcgtagtgtctgtagagacgtgaacgcggatcagagcgtagtgtctgtagagacgtgaacgcggatcagagcgtagtgtctgtagagacgtgaacgcggatcagagcgtagtgtctgtagagacgtgaacgcggatcagagtgtagtgtttgta

Function

GO:

id name namespace
GO:0007259 receptor signaling pathway via JAK-STAT biological_process
GO:0097696 receptor signaling pathway via STAT biological_process

KEGG:

id description
ko04380 Osteoclast differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578550.1 lncRNA upstream 16794 54286 ~ 57248 (+) True LOC117597791
TU146911 lncRNA upstream 19859 52848 ~ 54183 (+) True G124400
TU146908 lncRNA upstream 26494 47320 ~ 47548 (+) True G124398
TU146907 lncRNA upstream 30085 43748 ~ 43957 (+) True G124397
TU146884 lncRNA upstream 45132 20663 ~ 28910 (+) True G124385
XR_004578632.1 lncRNA downstream 17995 94047 ~ 96304 (+) True LOC117597868
XR_004578557.1 lncRNA downstream 20316 96368 ~ 103306 (+) True LOC113525545
XR_004578558.1 lncRNA downstream 20316 96368 ~ 103207 (+) False LOC113525545
XR_004578563.1 lncRNA downstream 28152 104204 ~ 108810 (+) False LOC117597797
XR_004578564.1 lncRNA downstream 29235 105287 ~ 108479 (+) True LOC117597797
XM_034306289.1 mRNA upstream 53404 112 ~ 20638 (+) True ipo11
XM_034306570.1 mRNA downstream 140109 216161 ~ 217382 (+) True LOC117597813
XM_034306571.1 mRNA downstream 185347 261399 ~ 264259 (+) True LOC117597814
XM_034306644.1 mRNA downstream 258851 334903 ~ 341086 (+) True fpgt
XM_034306641.1 mRNA downstream 266610 342662 ~ 366781 (+) True tnni3k
XM_034306643.1 mRNA downstream 266610 342662 ~ 366781 (+) False tnni3k
TU146909 other upstream 22970 48978 ~ 51072 (+) True G124399
TU146892 other upstream 60637 12688 ~ 13405 (+) False G124387
TU146973 other downstream 101610 177662 ~ 178417 (+) True G124442
TU147002 other downstream 196365 272417 ~ 330399 (+) True G124462
TU147050 other downstream 323704 399756 ~ 407434 (+) True G124498
TU147085 other downstream 431043 507095 ~ 508908 (+) False si:ch73-70k4.1
TU147120 other downstream 569914 645966 ~ 647953 (+) True G124541

Expression Profile