RNA id: TU146976


Basic Information

Item Value
RNA id TU146976
length 377
lncRNA type inter_gene
GC content 0.58
exon number 3
gene id G124444
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 180416 ~ 181667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGAGAGATCAGAACGTCCCGAGAACACGCCGAGATCAGAACGTCCCGAGAACACGGAGAGATCAGAACGTCCCGAGAACACGGAGAGATCAGAACCGTCCGAGAACACGCCGAGATCAGAACGTCCCGAGAACACGGAGAGATCAGAACGTCCCGAGAACACGCCGAGATCAGAACGTCCCGAGAACACGGAGAGATCAGAACGTCCCGAGAACACGCCGAGATCAGAACGTCCCGAGAACACGCCGAGATCAGAACGTCCCGAGAACACGCCGTGATCAGAACGTCCCGAGAACACGCCGTGATCAGAACGTCCCGAGAACACGGAGAGATCAGAACGTCCCGAGAACACGCCGAGATCAGAACGTCCCGAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146950 lncRNA upstream 3278 154481 ~ 177138 (+) False G124432
TU146983 lncRNA downstream 16264 197931 ~ 200943 (+) True G124451
TU146989 lncRNA downstream 25604 207271 ~ 230868 (+) True G124453
XR_004578543.1 lncRNA downstream 26494 208161 ~ 209413 (+) True LOC117597786
TU147026 lncRNA downstream 159771 341438 ~ 341758 (+) True G124481
TU147051 lncRNA downstream 219248 400915 ~ 402096 (+) True G124499
XM_034306289.1 mRNA upstream 159778 112 ~ 20638 (+) True ipo11
XM_034306570.1 mRNA downstream 34494 216161 ~ 217382 (+) True LOC117597813
XM_034306571.1 mRNA downstream 79732 261399 ~ 264259 (+) True LOC117597814
XM_034306644.1 mRNA downstream 153236 334903 ~ 341086 (+) True fpgt
XM_034306641.1 mRNA downstream 160995 342662 ~ 366781 (+) True tnni3k
XM_034306643.1 mRNA downstream 160995 342662 ~ 366781 (+) False tnni3k
TU146973 other upstream 1999 177662 ~ 178417 (+) True G124442
TU146916 other upstream 94333 70073 ~ 86083 (+) True G124403
TU146909 other upstream 129344 48978 ~ 51072 (+) True G124399
TU146892 other upstream 167011 12688 ~ 13405 (+) False G124387
TU147002 other downstream 90750 272417 ~ 330399 (+) True G124462
TU147050 other downstream 218089 399756 ~ 407434 (+) True G124498
TU147085 other downstream 325428 507095 ~ 508908 (+) False si:ch73-70k4.1
TU147120 other downstream 464299 645966 ~ 647953 (+) True G124541
TU147121 other downstream 464299 645966 ~ 647492 (+) False G124541

Expression Profile