RNA id: TU147065



Basic Information


Item Value
RNA id TU147065
length 581
lncRNA type intronic
GC content 0.41
exon number 2
gene id G124506
representative True

Chromosome Information


Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 436162 ~ 436973 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


ACTGTGTTTACATTACtgtgtgttgatgttgttgtgtGTTCGCATTGCTTTATGTTCACATTGTTGTgttaatactgttgtgtgttcaCGTTACTGTGTTgatgttactgtgtgtttacGTTATGTGTGTTCAGGTCATTGTGTGTTGACAttgttgtgtgttcatgttgttgtgtgttgacgttacagtgtgttcaggtcgttgtgtgttcaggttgttgtgtgttcaggttgatgtgtgttcatgttgttgtgtgttgacgttacagtgtgttcaggtcgttgtgtgttcaggttgttgtgtgttcatgttgttgtgtgttgacgttacagtgtgttcatgttgtgtgttcatgttgttgtgtgttgACGTTGCAGTGTGTTCAGGTCATTGTGTGTTCAGGTTGTTGTGTGTTCAGGTTGTTGTGTGTTAATGCTGTTGTGTGTTGACGTTACAGTGTGTTCAGGTCGTTGTGTGTTCAGGTTGTTGTGTGTTCAGGTTTGCAAtaagtttctgtgtgtgtttcagtttcacTTCATCCTCTGGTGTTATATAATAAATCCACACTGCTGAAGCTCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU147051 lncRNA upstream 34066 400915 ~ 402096 (+) True G124499
TU147026 lncRNA upstream 94404 341438 ~ 341758 (+) True G124481
TU146989 lncRNA upstream 205294 207271 ~ 230868 (+) True G124453
XR_004578543.1 lncRNA upstream 226749 208161 ~ 209413 (+) True LOC117597786
TU146983 lncRNA upstream 235219 197931 ~ 200943 (+) True G124451
TU147071 lncRNA downstream 24539 461512 ~ 466459 (+) True G124511
TU147072 lncRNA downstream 26606 463579 ~ 464969 (+) True G124512
TU147080 lncRNA downstream 52894 489867 ~ 490074 (+) True G124517
TU147082 lncRNA downstream 57919 494892 ~ 517899 (+) True G124519
TU147083 lncRNA downstream 66475 503448 ~ 503792 (+) True G124520
XM_034306641.1 mRNA upstream 69381 342662 ~ 366781 (+) True tnni3k
XM_034306643.1 mRNA upstream 69381 342662 ~ 366781 (+) False tnni3k
XM_034306642.1 mRNA upstream 69381 342662 ~ 366781 (+) False tnni3k
XM_034306644.1 mRNA upstream 95076 334903 ~ 341086 (+) True fpgt
XM_034306571.1 mRNA upstream 171903 261399 ~ 264259 (+) True LOC117597814
XM_034306306.1 mRNA downstream 30788 467761 ~ 478047 (+) True LOC113541233
XM_026938098.2 mRNA downstream 35567 472540 ~ 476546 (+) False LOC113541233
XM_026938255.2 mRNA downstream 53472 490445 ~ 494112 (+) True tnfsf10
XM_034306924.1 mRNA downstream 70091 507064 ~ 508910 (+) True si:ch73-70k4.1
XM_026912303.2 mRNA downstream 78337 515310 ~ 534999 (+) True LOC113525715
TU147050 other upstream 28728 399756 ~ 407434 (+) True G124498
TU147002 other upstream 105763 272417 ~ 330399 (+) True G124462
TU146973 other upstream 257745 177662 ~ 178417 (+) True G124442
TU146916 other upstream 350079 70073 ~ 86083 (+) True G124403
TU146909 other upstream 385090 48978 ~ 51072 (+) True G124399
TU147085 other downstream 70122 507095 ~ 508908 (+) False si:ch73-70k4.1
TU147120 other downstream 208993 645966 ~ 647953 (+) True G124541
TU147121 other downstream 208993 645966 ~ 647492 (+) False G124541
TU147123 other downstream 208993 645966 ~ 647492 (+) False G124541
TU147149 other downstream 267616 704589 ~ 705857 (+) True G124565

Expression Profile