RNA id: TU147071


Basic Information

Item Value
RNA id TU147071
length 210
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G124511
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 461512 ~ 466459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtacttatagtgGCCCGTCTtgatggccagtgtgtgtgggtgtgtgtgtgtgtgtgtgtgtacttatagcagCTCGTCtcgatggtcagtgtgtgtgtgtgtgtgtggctgtgtgtgtgtgtgtacttatagcgGCCCATCTCGatcgtcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147065 lncRNA upstream 24539 436162 ~ 436973 (+) True G124506
TU147051 lncRNA upstream 59416 400915 ~ 402096 (+) True G124499
TU147026 lncRNA upstream 119754 341438 ~ 341758 (+) True G124481
TU146989 lncRNA upstream 230644 207271 ~ 230868 (+) True G124453
XR_004578543.1 lncRNA upstream 252099 208161 ~ 209413 (+) True LOC117597786
TU147080 lncRNA downstream 23408 489867 ~ 490074 (+) True G124517
TU147082 lncRNA downstream 28433 494892 ~ 517899 (+) True G124519
TU147083 lncRNA downstream 36989 503448 ~ 503792 (+) True G124520
TU147077 lncRNA downstream 49296 515755 ~ 537160 (+) True G124514
TU147097 lncRNA downstream 139400 605859 ~ 658558 (+) False cept1a
XM_034306275.1 mRNA upstream 5424 410989 ~ 456088 (+) True prkcz
XM_034306641.1 mRNA upstream 94731 342662 ~ 366781 (+) True tnni3k
XM_034306643.1 mRNA upstream 94731 342662 ~ 366781 (+) False tnni3k
XM_034306642.1 mRNA upstream 94731 342662 ~ 366781 (+) False tnni3k
XM_034306644.1 mRNA upstream 120426 334903 ~ 341086 (+) True fpgt
XM_034306306.1 mRNA downstream 1302 467761 ~ 478047 (+) True LOC113541233
XM_026938098.2 mRNA downstream 6081 472540 ~ 476546 (+) False LOC113541233
XM_026938255.2 mRNA downstream 23986 490445 ~ 494112 (+) True tnfsf10
XM_034306924.1 mRNA downstream 40605 507064 ~ 508910 (+) True si:ch73-70k4.1
XM_026912303.2 mRNA downstream 48851 515310 ~ 534999 (+) True LOC113525715
TU147050 other upstream 54078 399756 ~ 407434 (+) True G124498
TU147002 other upstream 131113 272417 ~ 330399 (+) True G124462
TU146973 other upstream 283095 177662 ~ 178417 (+) True G124442
TU146916 other upstream 375429 70073 ~ 86083 (+) True G124403
TU146909 other upstream 410440 48978 ~ 51072 (+) True G124399
TU147085 other downstream 40636 507095 ~ 508908 (+) False si:ch73-70k4.1
TU147120 other downstream 179507 645966 ~ 647953 (+) True G124541
TU147121 other downstream 179507 645966 ~ 647492 (+) False G124541
TU147123 other downstream 179507 645966 ~ 647492 (+) False G124541
TU147149 other downstream 238130 704589 ~ 705857 (+) True G124565

Expression Profile