RNA id: TU147640


Basic Information

Item Value
RNA id TU147640
length 1310
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G124918
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1113054 ~ 1114384 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCAAAGACACCCAAACACttgtttaatttatacattttatttttttattaaattttatttagagtCTCTTAACCATCAATCTGCAACCATTAAtctactttttaaaatgcatttatagcaaaacaaaaatcattgtgaaaataattgttgttattattattattattattattattattattatGAATTatacaaatgaaaaattctCAATTCTTTCGATcttttttgtgatttaaaagTTAAATCTCTGACTCCTGAAAGATGGAACCTCTGGTCTGTAATCAGCGTGTTAGTGTTAAAACTGCGTTACTTCcattgttttcatgtttgtgcTCTAATCGCATTTATGAAATTGCACTACTCCGAGCTCGGCATGCGCTGATACACAACGCGAAGAAATCATCTTCACCAAACAACAGTAACGTAAAAGTTTAACAGAGCGATGCACCGAAATCAGCATTCCCagattaaattacaaataagtcgttaaagaaaaaaattaaagtaaaaaaccCACAAGATAATTtagaatattttacatttttgataaATTCAGTCCTTTCATTAGCTTTCCACAACTTTTTTTGattatactgtttattttaattatcttttttttaataaaatttttaatttaattgttcatttcaaatttaccagttaaataatttttaattattaaatgaaattattttatttgattatgtgtaaaagtgtaaaatttgACGCTTCATTGTACGTCTGTATACagaatatttttagttttattttttaaaaatgtatttttttttttctttttcacttgtGGAACTTTCGGTGCATCTCTGGTTTAAAACGTGGCTCTGAGctgagtttaatttaattttgtaaaaattaaaacatcatCGAGTGCTGATGATGTGAGAGTTGTGTATCAGCACATGCCTGCTCAGAAGACGGACTTCCAAATAGaatcatttttatatcattacgattgttattattgttgttattattcataaattaGGGAACTTTAGCTAGCTCGAGGGTCGTGTGGAAAATCCACGATAAATTAACGTCATTAATAAACCAAAAGTAGGATTTGTTTCATCAGAAGTTTCGAGTTGTTTAGAGGGTTAGTGTTTTATAAATTGTGGCGATTCGAGCAGAAGAGCGGATTGTTGTTGCGCTGAAGAAAAGATTTTGCGTATTTTCCACATCGTGCAAACGCACTAACACTTTTTGCCTTATTAAAaccatttagcatttttttccattacgTAATAACGGTTTGGTTTtaattgttcttcttctttgtgtatgtgtaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147613 lncRNA upstream 47974 1064601 ~ 1065080 (+) True G124895
TU147586 lncRNA upstream 117884 994852 ~ 995170 (+) True G124874
TU147247 lncRNA upstream 189930 922619 ~ 923124 (+) True G124643
TU147184 lncRNA upstream 291714 818822 ~ 821340 (+) False dennd2da
TU147182 lncRNA upstream 305209 807190 ~ 807845 (+) False dennd2da
TU147646 lncRNA downstream 76691 1191075 ~ 1201926 (+) True doc2d
TU147647 lncRNA downstream 79677 1194061 ~ 1201926 (+) False doc2d
TU147673 lncRNA downstream 113905 1228289 ~ 1229056 (+) True G124947
TU147775 lncRNA downstream 191336 1305720 ~ 1306145 (+) True G125031
TU147817 lncRNA downstream 226502 1340886 ~ 1343920 (+) True G125061
XM_034306586.1 mRNA upstream 987 1103715 ~ 1112067 (+) True lonrf1l
XM_026911599.2 mRNA upstream 118269 965498 ~ 994785 (+) True jak3
XM_034306816.1 mRNA upstream 152055 940542 ~ 960999 (+) True slc5a5
XM_026928160.2 mRNA downstream 41029 1155413 ~ 1200518 (+) False doc2d
XM_034306658.1 mRNA downstream 132146 1246530 ~ 1255935 (+) True LOC113535335
XM_034306659.1 mRNA downstream 143059 1257443 ~ 1263654 (+) True LOC117597828
XM_034306739.1 mRNA downstream 360717 1475101 ~ 1501389 (+) True cep350
XM_034306741.1 mRNA downstream 360717 1475101 ~ 1501389 (+) False cep350
TU147636 other upstream 6767 1103735 ~ 1106287 (+) False lonrf1l
TU147176 other upstream 296397 777964 ~ 816657 (+) False dennd2da
TU147173 other upstream 296397 792519 ~ 816657 (+) False dennd2da
TU147174 other upstream 309251 780019 ~ 803803 (+) False dennd2da
TU147153 other upstream 407197 704685 ~ 705857 (+) False G124565
TU147818 other downstream 229952 1344336 ~ 1346585 (+) True G125062
TU147915 other downstream 689113 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147950 other downstream 762657 1877041 ~ 1931418 (+) False LOC113535242
XR_003403572.2 other downstream 1101718 2216102 ~ 2232140 (+) False alkal1
XR_004578620.1 other downstream 2980885 4095269 ~ 4101689 (+) False si:ch73-233m11.2

Expression Profile