RNA id: TU147646


Basic Information

Item Value
RNA id TU147646
length 2568
lncRNA type sense_over
GC content 0.42
exon number 6
gene id doc2d
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1155413 ~ 1201926 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggacagcGGGGACGTATCCTGGTGTCTCTGTGTTATATCGTGGAGAAGACGTGTTTGGTGGTTGGGATTATTCGCTGTGCTCACCTCGCAGCGATGGACTCTAACGGCTACTCCGACCCCTTCGTCAAGATCGTTCTTCAGCCAGATATGGGGAAAAAGTCCAAGTATAAAACttcagtgaagaaaaaaacattaaacccGGAGTTTAATGAGGAATTTATATACGAGGTTCCTCACGATCAACTGGCTAAGAAGACTCTGGAAATTTCCGTGTGGGATTACGATCTGGGAATGAGCAACGATTTCATCGgaGGAGTTGAATTGGGGATCAATGCTAAAGGAGAGCGATTGAAGCACTGGTTCGAGTGTCTTAAATACAAAGGAAAGAAAGTGGAGTACTGGCACACGCTCACGCAGCAAGGGGCACCGAGCAGCGACTAACataccctctcacacacacacacacacacacacacacacacacatatacggaAGAGTACGAGTAATAATGAAATGATGCAATAAACACACTCATGAGAGTGCGACGGATGACGAAGTGGTGTCTAGATGTCACATCGTCCTTGTGTATCTGAAAACACACGCAGGTGGTGATTCGGGAAACGACCCCGCTGACGTCACACACACTTTGGAGTTGTGTAATAACCGttatgaagtgtgtgtcatGGACAATTTGCACATCAGTCAAAGCACAACCCAGGCTGGATTTTGTccttgtgtatttgtttgttgtttctgtgtccttatgtgtgtgtgagtgtgtgtgtgagtgagtgtgtgtgtgtgagtgtgtgtttgtacatacATGATTTCCTCACATCTTCCATACAGTCAGTGATGTACAGAGAGAAgtgaaacactcaaacacacacacacagaggcctgGAATAAGCTAGCATGAGAACCTTTAATCTCCTCATCAGGACAggattattattgtgtgttgcTCACCACTGGATTGTGAACAGCGACTTCAAAAATCTGTACAGCATCATGGacgttgttgtgtttgtgtgtctgtctgaacGACCTcgttgtgtaatgtgtgtgtgttcagtctaCGTTGGACGTGTCCGTGGAGTCACCTTCAAAATGTGTCCCcgttcaaaaaaaaacaaaaagcacactgatgagatgttgatgatgatgatgatgatgatgatgaagatgatggctCTCGACTGCCCTCTACTGGTGCAGCATTTGAATTGCTCAACActcaaacaccaaaaaaaaacagccaatcTCCTCTGAAGATCTGAACCAtcaaacagaaacacatcaaGTACCAACATCAAAAACGCTAAGATGCTGAAATATCAATGAGAAAAGCTCAACTATCCTCTTAGAAGCTTAAAAGGGGCTCAGTCACCAATCAGAACAACTCATTGATGATGAACCTGCTTCTGAAAATCTTAACCACCAACTTAACCACCTTCAAAGAGCCTAATCACCAATAAACAACCTACAAATATCTCAGCCTCTGATCATATGCATCCCAAAAGCCctgaaataaatcaaacatcCTCTTAGGATCTGAAACACCAACATGAAATActctagaaataaaaaaaagcctgtgaGAAGGTCAGTCAAACAGAGGAGCTCAGAAACCAGCCAAACAGTCAAAGACCTCAACCACCAATCCAACTGTCGCCAAAAACACCCAACAAAAAGCTCAACCTCCAATCAAACAGCATGTGAAGAATTCAACCGCCAATCAAACATCATATGAAGAACTCAATCTCCAATCAAACATCATCTGAAGAATTCAACCGCCAATCAAACAGCATGTGAAGAATTCAACCTCCAATCAAACAGCATGTGAAGAATTCAACCTCCAATCAAACAGCATGTGAAGAATTCAACCTCCAATCAAACAGCATCTGAAGAACTCAACCTCCAATATGACAGCATGTGAAGAACTCCACCAATCCAACAGAATCTGAAGAACTAAACCAGAGTCAACTACCAACTACCAACTTAAACCAATCCAGAAGCTTCTGAAGAGGTCATCCACTTCCTGAACATCCAAAAATCTCATAAaccaataaaacacatcagaaatgaTTGAAATGATCAAAAAGCCTTCAAAGACTTTGTCCACCAATAAAGCAACGCCTGAAGAGCTTCACCACCAATCAGTCAGCCTCCAAAGTGTGCATACAACAAGAACTCCAGCTGGTTGATGGTTTGATTCAATCAATGACTTCCTGGAAGATCTCCACATCTCCACAACTCTGGATTCAGTGCAGGAAATCTGTAAGGATGCCGTGTGTTACTGAGAACTGTGTTTTCAGGTCTGATTTCACACAAAGCTCtctttttattgtaatgtttcaATTTTCAAAAGATCTGCATGAAGATGTTACAACAAGTTACCTGTCATCTACTAAAGACTTCATCATCAACCAAGAGTCCAGCAACGCTGGAGATTATGCAAGCTGGACTTTTTGCAAGCCATCTGTCTTTACTTTGTGGTGTTGGTGAACCAAACACTAAAACAGGGTGTTCCTTGAGTTTGAGCTAATTCATTAAGCTTCAGGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147640 lncRNA upstream 76691 1113054 ~ 1114384 (+) True G124918
TU147613 lncRNA upstream 125995 1064601 ~ 1065080 (+) True G124895
TU147586 lncRNA upstream 195905 994852 ~ 995170 (+) True G124874
TU147247 lncRNA upstream 267951 922619 ~ 923124 (+) True G124643
TU147184 lncRNA upstream 369735 818822 ~ 821340 (+) False dennd2da
TU147673 lncRNA downstream 26363 1228289 ~ 1229056 (+) True G124947
TU147775 lncRNA downstream 103794 1305720 ~ 1306145 (+) True G125031
TU147817 lncRNA downstream 138960 1340886 ~ 1343920 (+) True G125061
TU147861 lncRNA downstream 277381 1479307 ~ 1503724 (+) True G125094
TU147856 lncRNA downstream 303100 1505026 ~ 1507275 (+) True G125089
XM_034306586.1 mRNA upstream 79008 1103715 ~ 1112067 (+) True lonrf1l
XM_026911599.2 mRNA upstream 196290 965498 ~ 994785 (+) True jak3
XM_034306819.1 mRNA upstream 230076 947768 ~ 960999 (+) False slc5a5
XM_034306818.1 mRNA upstream 230076 948993 ~ 960999 (+) False slc5a5
XM_034306817.1 mRNA upstream 234006 940542 ~ 957069 (+) False slc5a5
XM_034306658.1 mRNA downstream 44604 1246530 ~ 1255935 (+) True LOC113535335
XM_034306659.1 mRNA downstream 55517 1257443 ~ 1263654 (+) True LOC117597828
XM_034306739.1 mRNA downstream 273175 1475101 ~ 1501389 (+) True cep350
XM_034306741.1 mRNA downstream 273175 1475101 ~ 1501389 (+) False cep350
XM_034306740.1 mRNA downstream 273175 1475101 ~ 1501389 (+) False cep350
TU147636 other upstream 84788 1103735 ~ 1106287 (+) False lonrf1l
TU147176 other upstream 374418 777964 ~ 816657 (+) False dennd2da
TU147173 other upstream 374418 792519 ~ 816657 (+) False dennd2da
TU147174 other upstream 387272 780019 ~ 803803 (+) False dennd2da
TU147157 other upstream 485218 704685 ~ 705857 (+) False G124565
TU147818 other downstream 142410 1344336 ~ 1346585 (+) True G125062
TU147915 other downstream 601571 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147950 other downstream 675115 1877041 ~ 1931418 (+) False LOC113535242
XR_003403572.2 other downstream 1014176 2216102 ~ 2232140 (+) False alkal1
XR_004578620.1 other downstream 2893343 4095269 ~ 4101689 (+) False si:ch73-233m11.2

Expression Profile