RNA id: XM_026928160.2


Basic Information

Item Value
RNA id XM_026928160.2
length 2316
RNA type mRNA
GC content 0.50
exon number 11
gene id doc2d
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1155413 ~ 1201926 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgagagagagagagagagtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtggaggggatGTATATTGACTCCAGGCAGCGGtggagtgtgttcagtgtgcgTGAGACAGAGGACGAGATGGAACATCGGGACAGATGAAGACTGCAaatggtccTTCCTGTGTGTTGGTCCAGATGAGTGTGTCCAAAGCTCCTCCCAGCCACTCCCACTTCCCGTCAGGAGGCGGTCCTTCCTCTCATCTGACCCTCCCCCCGccgtcctcctcctccacgTCCCCGTCCCCCTCGTCTGTGTCCCCGCCCTCCGCCCCCCCTCCCCCATCTCCGGTGAAGATCTCCATGCAGGAACACTTCGCCATTAACGTGTGTCCCGGCCCCATCCTGCCCATCCCCAACCTGTCTGACTTCTTCCCGCGCTACCACGCCTTCCCGACCACGCCCCCTCCGCCCAGAGAGAAACCTGTCGCTCGGAcccgagagacagacagagagagggacgagGAGAGACAGGAGGATGGAGAAGAGAGGGAGGGCATGGACTCTGACGATGACGACAcgtaCCTCGGCACTCTGGAGTTCAGCCTGCTGTTTGATCAGGAGAACAACTGCCTGCACTGCACTATTCATAAGGCAAagGGACTAAAGGCCATGGACTCCAACGGACTCGCCGACCCCTATGTGAAGCTCCACCTCCTGCCTGGAGCAAGCaagGCAAATAAATTGCGCACAAAGACCCTGAAGAATACTTTGAATCCAGTTTGGAATGAGACCCTGGTTTACCATGGCATTACCGCTGCTGACATGACAACAAAAACTCTCAGgctgtgtgtgtgtgatatggaCCGTTTGGGTCGTAACGAGTTTATTGGTGAAGTGCGAGTCGCTTTAAAGAAGCTCAAAGAAGGAGAGAGCAAACGATACAACATGGGACTGGAGAGAATCGCACagGTGCGAGAAGGTAACAATCAGACGGTGGATCAGAGTTCACAACTAGCAGAGGaggagcGGGGACGTATCCTGGTGTCTCTGTGTTATATCGTGGAGAAGACGTGTTTGGTGGTTGGGATTATTCGCTGTGCTCACCTCGCAGCGATGGACTCTAACGGCTACTCCGACCCCTTCGTCAAGATCGTTCTTCAGCCAGATATGGGGAAAAAGTCCAAGTATAAAACttcagtgaagaaaaaaacattaaacccGGAGTTTAATGAGGAATTTATATACGAGGTTCCTCACGATCAACTGGCTAAGAAGACTCTGGAAATTTCCGTGTGGGATTACGATCTGGGAATGAGCAACGATTTCATCGgaGGAGTTGAATTGGGGATCAATGCTAAAGGAGAGCGATTGAAGCACTGGTTCGAGTGTCTTAAATACAAAGGAAAGAAAGTGGAGTACTGGCACACGCTCACGCAGCAAGGGGCACCGAGCAGCGACTAACataccctctcacacacacactcacacacacactcactcacacacacacacacacacacacacatatacggaAGAGTACGAGTAATAATGAAATGATGCAATAAACACACTCATGAGAGTGCGACGGATGACGAAGTGGTGTCTAGATGTCACATCGTCCTTGTGTATCTGAAAACACACGCAGGTGGTGATTCGGGAAACGACCCCGCTGACGTCACACACACTTTGGAGTTGTGTAATAACCGttatgaagtgtgtgtcatGGACAATTTGCACATCAGTCAAAGCACAACCCAGGCTGGATTTTGTccttgtgtatttgtttgttgtttctgtgtccttatgtgtgtgtgagtgtgtgtgtgagtgagtgtgtgtgtgtgagtgtgtgtttgtacatacATGATTTCCTCACATCTTCCATACAGTCAGTGATGTACAGAGAGAAgtgaaacactcaaacacacacacacagaggcctgGAATAAGCTAGCATGAGAACCTTTAATCTCCTCATCAGGACAggattattattgtgtgttgcTCACCACTGGATTGTGAACAGCGACTTCAAAAATCTGTACAGCATCATGGacgttgttgtgtttgtgtgtctgtctgaacGACCTcgttgtgtaatgtgtgtgtgttcagtctaCGTTGGACGTGTCCGTGGAGTCACCTTCAAAATGTGTCCCcgttcaaaaaaaaacaaaaagcacactgatgagatgttgatgatgatgatgatgatgatgatgaagatgatggctCTCGACTGCCCTCTACTGGTGCAGCATTTGAATTGCTCAACActcaaacaccaaaaaaaaacagccaatcTCCTCTGAAGATCTGAACC

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147640 lncRNA upstream 41029 1113054 ~ 1114384 (+) True G124918
TU147613 lncRNA upstream 90333 1064601 ~ 1065080 (+) True G124895
TU147586 lncRNA upstream 160243 994852 ~ 995170 (+) True G124874
TU147247 lncRNA upstream 232289 922619 ~ 923124 (+) True G124643
TU147184 lncRNA upstream 334073 818822 ~ 821340 (+) False dennd2da
TU147673 lncRNA downstream 27771 1228289 ~ 1229056 (+) True G124947
TU147775 lncRNA downstream 105202 1305720 ~ 1306145 (+) True G125031
TU147817 lncRNA downstream 140368 1340886 ~ 1343920 (+) True G125061
TU147861 lncRNA downstream 278789 1479307 ~ 1503724 (+) True G125094
TU147856 lncRNA downstream 304508 1505026 ~ 1507275 (+) True G125089
XM_034306586.1 mRNA upstream 43346 1103715 ~ 1112067 (+) True lonrf1l
XM_026911599.2 mRNA upstream 160628 965498 ~ 994785 (+) True jak3
XM_034306816.1 mRNA upstream 194414 940542 ~ 960999 (+) True slc5a5
XM_034306658.1 mRNA downstream 46012 1246530 ~ 1255935 (+) True LOC113535335
XM_034306659.1 mRNA downstream 56925 1257443 ~ 1263654 (+) True LOC117597828
XM_034306739.1 mRNA downstream 274583 1475101 ~ 1501389 (+) True cep350
XM_034306741.1 mRNA downstream 274583 1475101 ~ 1501389 (+) False cep350
XM_034306740.1 mRNA downstream 274583 1475101 ~ 1501389 (+) False cep350
TU147636 other upstream 49126 1103735 ~ 1106287 (+) False lonrf1l
TU147176 other upstream 338756 777964 ~ 816657 (+) False dennd2da
TU147173 other upstream 338756 792519 ~ 816657 (+) False dennd2da
TU147174 other upstream 351610 780019 ~ 803803 (+) False dennd2da
TU147153 other upstream 449556 704685 ~ 705857 (+) False G124565
TU147818 other downstream 143818 1344336 ~ 1346585 (+) True G125062
TU147915 other downstream 602979 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147950 other downstream 676523 1877041 ~ 1931418 (+) False LOC113535242
XR_003403572.2 other downstream 1015584 2216102 ~ 2232140 (+) False alkal1
XR_004578620.1 other downstream 2894751 4095269 ~ 4101689 (+) False si:ch73-233m11.2

Expression Profile