RNA id: TU147885


Basic Information

Item Value
RNA id TU147885
length 221
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G125116
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1617620 ~ 1618870 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTTGCTGGTACAAACAGCTCACTGCTGCTCCGCCGAATGCCGTCCTGCgttctcctctccttctctcagatgaaccctttaAAACCGTCCGGATCGAGTTTGTGTACAGAGGAAATGTATTCCTGCATGGCCTGCTCTTTACTCATATCACCCAACTGCTTCCACGctgtcctgcacacacacacacacacacacacacacacacacacacacatacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147866 lncRNA upstream 24727 1543836 ~ 1592893 (+) False G125098
TU147867 lncRNA upstream 24727 1545694 ~ 1592893 (+) False G125098
TU147865 lncRNA upstream 24727 1591983 ~ 1592893 (+) True G125098
TU147856 lncRNA upstream 110345 1505026 ~ 1507275 (+) True G125089
TU147861 lncRNA upstream 113896 1479307 ~ 1503724 (+) True G125094
TU147886 lncRNA downstream 2387 1621257 ~ 1623005 (+) True G125117
TU147893 lncRNA downstream 67449 1686319 ~ 1696261 (+) True G125119
TU147909 lncRNA downstream 143434 1762304 ~ 1763325 (+) False G125129
TU147910 lncRNA downstream 143434 1762304 ~ 1763325 (+) True G125129
TU147928 lncRNA downstream 192484 1811354 ~ 1813285 (+) True G125144
XM_034306820.1 mRNA upstream 36893 1562749 ~ 1580727 (+) True lhx4
XM_034306746.1 mRNA upstream 78766 1515223 ~ 1538854 (+) True qsox1
XM_034306742.1 mRNA upstream 116231 1475101 ~ 1501389 (+) False cep350
XM_034306566.1 mRNA downstream 9208 1628078 ~ 1693853 (+) True xpr1a
XM_034306844.1 mRNA downstream 82118 1700988 ~ 1726361 (+) True sin3b
XM_034306302.1 mRNA downstream 107938 1726808 ~ 1753281 (+) True def6a
XM_034306303.1 mRNA downstream 107989 1726859 ~ 1753281 (+) False def6a
XM_026928023.2 mRNA downstream 136655 1755525 ~ 1759336 (+) True ndufb11
TU147818 other upstream 271035 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 511333 1103735 ~ 1106287 (+) False lonrf1l
TU147176 other upstream 800963 777964 ~ 816657 (+) False dennd2da
TU147915 other downstream 184627 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147950 other downstream 258171 1877041 ~ 1931418 (+) False LOC113535242
XR_003403572.2 other downstream 597232 2216102 ~ 2232140 (+) False alkal1
XR_004578620.1 other downstream 2476399 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 2601814 4220684 ~ 4278077 (+) False ssuh2rs1

Expression Profile